Items where Research Group is "Computational Biology

B

Bagnall, Anthony J., Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095, Whittley, Ian M., Bull, Larry, Studley, Matthew, Pettipher, Mike and Tekiner, F. (2007) Super computer heterogeneous classifier meta-ensembles. International Journal of Data Warehousing and Mining (IJDWM), 3 (2). pp. 67-82. ISSN 1548-3924

Bang, S., Koolen, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2007) Two theorems concerning the Bannai-Ito Conjecture. European Journal of Combinatorics, 28 (7). pp. 2026-2052. ISSN 0195-6698

Bignell, Graham R., Santarius, Thomas, Pole, Jessica C. M., Butler, Adam P., Perry, Janet, Pleasance, Erin, Greenman, Chris, Menzies, Andrew, Taylor, Sheila, Edkins, Sarah, Campbell, Peter, Quail, Michael, Plumb, Bob, Matthews, Lucy, McLay, Kirsten, Edwards, Paul A. W., Rogers, Jane, Wooster, Richard, Futreal, P. Andrew and Stratton, Michael R. (2007) Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution. Genome Research, 17 (9). pp. 1296-1303. ISSN 1088-9051

Bryant, David, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2007) Consistency of the Neighbor-Net algorithm. Algorithms for Molecular Biology, 2. ISSN 1748-7188

Brysting, Anne K., Oxelman, Bengt, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Brochmann, Christian (2007) Untangling complex histories of genome mergings in high polyploids. Systematic Biology, 56 (3). pp. 467-476. ISSN 1063-5157

C

Cawley, G. C. ORCID: https://orcid.org/0000-0002-4118-9095 (2007) Model selection for kernel probit regression. In: European Symposium on Artificial Neural Networks, 2007-04-25 - 2007-04-27.

Cawley, G. C. ORCID: https://orcid.org/0000-0002-4118-9095, Talbot, N. L. C. and Girolami, M. (2007) Sparse multinomial logistic regression via Bayesian L1 regularisation. In: Advances in Neural Information Processing Systems. MIT Press, pp. 209-216. ISBN 9780262195683

Cawley, Gavin C ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, Nicola L. C (2007) Agnostic learning versus prior knowledge in the design of kernel machines. In: IEEE/INNS International Joint Conference on Neural Networks, 2007-08-12 - 2007-08-17.

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095, Janacek, Gareth J., Haylock, Malcolm R. and Dorling, Stephen R. (2007) Predictive uncertainty in environmental modelling. In: Neural Networks. Elsevier, pp. 537-549.

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095, Janacek, Gareth J. and Talbot, Nicola L. C. (2007) Generalised Kernel Machines. In: IEEE/INNS International Joint Conference on Neural Networks, 2007-08-12 - 2007-08-17.

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, Nicola L. C. (2007) Preventing over-fitting during model selection via Bayesian regularisation of the hyper-parameters. Journal of Machine Learning Research, 8. pp. 841-861. ISSN 1533-7928

D

Dicks, E., Teague, J. W., Stephens, P., Raine, K., Yates, A., Mattocks, C., Tarpey, P., Butler, A., Menzies, A., Richardson, D., Jenkinson, A., Davies, H., Edkins, S., Forbes, S., Gray, K., Greenman, C., Shepherd, R., Stratton, M. R., Futreal, P. A. and Wooster, R. (2007) AutoCSA, an algorithm for high throughput DNA sequence variant detection in cancer genomes. Bioinformatics, 23 (13). pp. 1689-1691. ISSN 1367-4803

Dress, A, Huber, Katharina, Koolen, J and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2007) An algorithm for computing virtual cut points in finite metric spaces. Lecture Notes in Computer Sciences. ISSN 0302-9743

Dress, A., Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2007) Some uses of the Farris Transform in mathematics and phylogenetics - A review. Annals of Combinatorics, 11 (1). pp. 1-37. ISSN 0218-0006

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2007) An algorithm for computing virtual cut points in finite metric spaces. In: Combinatorial Optimization and Applications. Lecture Notes in Computing Science, 4616 . Springer Berlin / Heidelberg, pp. 4-10.

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Freyhult, Eva, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Clote, Peter (2007) Boltzmann probability of RNA structural neighbors and riboswitch detection. Bioinformatics, 23 (16). pp. 2054-2062. ISSN 1367-4803

Freyhult, Eva, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Clote, Peter (2007) RNAbor: a web server for RNA structural neighbors. Nucleic Acids Research, 35 (suppl 2). W305-W309. ISSN 0305-1048

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Greenman, Christopher, Stephens, Philip, Smith, Raffaella, Dalgliesh, Gillian L., Hunter, Christopher, Bignell, Graham, Davies, Helen, Teague, Jon, Butler, Adam, Stevens, Claire, Edkins, Sarah, O’Meara, Sarah, Vastrik, Imre, Schmidt, Esther E., Avis, Tim, Barthorpe, Syd, Bhamra, Gurpreet, Buck, Gemma, Choudhury, Bhudipa, Clements, Jody, Cole, Jennifer, Dicks, Ed, Forbes, Simon, Gray, Kris, Halliday, Kelly, Harrison, Rachel, Hills, Katy, Hinton, Jon, Jenkinson, Andy, Jones, David, Menzies, Andy, Mironenko, Tatiana, Perry, Janet, Raine, Keiran, Richardson, Dave, Shepherd, Rebecca, Small, Alexandra, Tofts, Calli, Varian, Jennifer, Webb, Tony, West, Sofie, Widaa, Sara, Yates, Andy, Cahill, Daniel P., Louis, David N., Goldstraw, Peter, Nicholson, Andrew G., Brasseur, Francis, Looijenga, Leendert, Weber, Barbara L., Chiew, Yoke-eng, Defazio, Anna, Greaves, Mel F., Green, Anthony R., Campbell, Peter, Birney, Ewan, Easton, Douglas F., Chenevix-Trench, Georgia, Tan, Min-han, Khoo, Sok Kean, Teh, Bin Tean, Yuen, Siu Tsan, Leung, Suet Yi, Wooster, Richard, Futreal, P. Andrew and Stratton, Michael R. (2007) Patterns of somatic mutation in human cancer genomes. Nature, 446 (7132). pp. 153-158. ISSN 0028-0836

Grünewald, Stefan, Forslund, Kristoffer, Dress, Andreas and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2007) QNet: An agglomerative method for the construction of phylogenetic networks from weighted quarters. Molecular Biology and Evolution, 24 (2). pp. 532-538. ISSN 0737-4038

Guyon, Isabelle, Saffari, Amir, Dror, Gideon and Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 (2007) Agnostic learning vs. prior knowledge challenge. In: IEEE/INNS International Joint Conference on Neural Networks, 2007-08-12 - 2007-08-17.

H

Holland, B., Conner, Glenn, Huber, Katharina T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2007) Imputing supertrees and supernetworks from quartets. Systematic Biology, 56 (1). pp. 57-67. ISSN 1063-5157

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Koolen, Jack, Lesser, Alice and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2007) Concerning the relationship between realizations and tight spans of finite metrics. Discrete and Computational Geometry, 38 (3). pp. 605-614. ISSN 0179-5376

Kutalik, Z., Tucker, W. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2007) S-system parameter estimation for noisy metabolic profiles using Newton-flow analysis. IET Systems Biology, 1 (3). pp. 174-180. ISSN 1751-8849

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Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Semple, Charles and Steel, Mike (2007) Optimizing phylogenetic diversity under constraints. Journal of Theoretical Biology, 246 (1). pp. 186-194. ISSN 0022-5193

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Rusholme Pilcher, Rachel, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Pakseresht, Nima, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Manning, Kenneth, Seymour, Graham and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2007) Identification of novel short RNAs in tomato (Solanum lycopersicum). Planta, 226 (3). pp. 709-717. ISSN 0032-0935

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Saadi, Kamel, Talbot, Nicola L. C. and Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 (2007) Optimally regularised kernal Fisher discriminant classification. Neural Networks, 20 (7). pp. 832-841. ISSN 0893-6080

Snow, Catherine, Qi, Guoying and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2007) Essential dynamics sampling study of adenylate kinase: Comparison to citrate synthase and implication for the hinge and shear mechanisms of domain motions. Proteins: Structure Function and Bioinformatics, 67 (2). pp. 325-337. ISSN 0887-3585

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Tucker, Warwick, Kutalik, Zoltán and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2007) Estimating parameters for generalized mass action models using constraint propagation. Mathematical Biosciences, 208 (2). pp. 607-620. ISSN 0025-5564