A

Appia‑Ayme, C, Hall, A, Patrick, E, Rajadurai, S, Clarke, TA and Rowley, G (2012) ZraP is a periplasmic molecular chaperone and a repressor of the zinc-responsive two-component regulator ZraSR. Biochemical Journal, 442 (1). pp. 85-93. ISSN 0264-6021

Arkenberg, A, Runkel, S, Richardson, DJ and Rowley, G (2011) The production and detoxification of a potent cytotoxin, nitric oxide, by pathogenic enteric bacteria. Biochemical Society Transactions, 39 (6). pp. 1876-1879. ISSN 0300-5127

B

Bamford, V.A., Kolade, O.O., Osbourn, A.E. and Hemmings, A.M. (2004) Purification, crystallization and preliminary X-ray diffraction analysis of a fungal saponin-detoxifying enzyme. Acta Crystallographica D, 60. pp. 1331-1333.

Bonete, MJ, Martinez-Espinosa, RM, Pire, C, Zafrilla, B and Richardson, DJ (2008) Nitrogen metabolism in haloarchaea. Saline Systems, 4. p. 9. ISSN 1746-1448

Bowater, Richard, Cobb, Andrew, Pivonkova, Hana, Havran, Ludek and Fojta, Miroslav (2015) Biophysical and electrochemical studies of protein-nucleic acid interactions. Monatshefte für Chemie - Chemical Monthly, 146 (5). pp. 723-739. ISSN 0026-9247

Bowden, S.D., Rowley, G., Hinton, J.C. and Thompson, A. (2009) Glucose and glycolysis are required for the successful infection of macrophages and mice by Salmonella enterica serovar typhimurium. Infection and Immunity, 77 (7). pp. 3117-3126. ISSN 0019-9567

Bradley, Justin M., Svistunenko, Dimitri A., Lawson, Tamara L., Hemmings, Andrew M., Moore, Geoffrey R. and Le Brun, Nick E. (2015) Three aromatic residues are required for electron transfer during iron mineralization in Bacterioferritin. Angewandte Chemie International Edition, 127 (49). 14976–14980. ISSN 1433-7851

Brondijk, T.H.C., Fiegen, D., Richardson, D.J. and Cole, J.A. (2002) Roles of NapF, NapG and NapH, subunits of the Escherichia coli periplasmic nitrate reductase, in ubiquinol oxidation. Molecular Microbiology, 44. pp. 245-255. ISSN 1365-2958

Brondijk, T.H.C., Nilavongse, A., Filenko, N., Richardson, D.J. and Cole, J.A. (2004) NapGH components of the periplasmic nitrate reductase of Escherichia coli K-12: location, topology and physiological roles in quinol oxidation and redox balancing. Biochemical Journal, 379. pp. 47-55.

Bueno, E., Richardson, D.J. and Bedmar, E.J. (2009) Expression of Bradyrhizobium japonicum cbb(3) terminal oxidase under denitrifying conditions is subjected to redox conrol. FEMS Microbiology Letters, 298 (1). pp. 20-28. ISSN 1574-6968

Bullard, DR and Bowater, RP (2006) Direct comparison of nick-joining activity of the nucleic acid ligases from bacteriophage T4. Biochemical Journal, 398 (1). pp. 135-144. ISSN 0264-6021

Butt, Julea, Gates, Andrew, Marritt, Sophie and Richardson, David (2015) Enzyme Film Electrochemistry. In: Electrochemical Processes in Biological Systems. Wiley-Blackwell, New Jersey, pp. 105-120. ISBN 978-0-470-57845-2

C

Cheesman, Myles, Oganesyan, Vasily, Watmough, Nick, Butler, C.S. and Thomson, Andrew J. (2004) The Nature of the Exchange Coupling between High-Spin Fe(III) Heme o3 and CuB(II) in Escherichia coli Quinol Oxidase, Cytochrome bo3: MCD and EPR Studies. Journal of the American Chemical Society, 126 (13). pp. 4157-4166. ISSN 0002-7863

Cheesman, Myles, Watmough, Nick J, Pires, Charlotte A, Turner, Richard, Brittain (Auckland), T, Gennis (University of Illinois), Robert B, Greenwood, Colin and Thomson, Andrew (1993) Cytochrome bo from Escherichia coli: identification of haem ligands and reaction of the reduced enzyme with carbon monoxide. Biochemical Journal, 289. pp. 709-718. ISSN 0264-6021

Cheesman, Myles R., Watmough, Nicholas J., Gennis, Robert B., Greenwood, Colin and Thomson, Andrew J. (1994) Magnetic-circular-dichroism studies of Escherichia coli cytochrome bo. Identification of high-spin ferric, low-spin ferric and ferryl [Fe(IV)] forms of heme o. European Journal of Biochemistry, 219 (1-2). pp. 595-602. ISSN 0014-2956

Clark, L.C., Seipke, R.F., Prieto, P., Willemse, J., van Wezel, G.P., Hutchings, M.I. and Hoskisson, P.A. (2013) Mammalian cell entry genes in Streptomyces may provide clues to the evolution of bacterial virulence. Scientific Reports, 3. ISSN 2045-2322

Clarke, TA and Waskell, LA (2003) The metabolism of clopidogrel is catalyzed by human cytochrome P450 3A and is inhibited by atorvastatin. Drug Metabolism & Disposition, 31 (1). pp. 53-59. ISSN 1521-009X

Crack, J, Smith, LJ, Stapleton, MR, Peck, J, Watmough, N, Buttner, MJ, Buxton, RS, Green, J, Oganesyan, V, Thomson, AJ and Le Brun, NE (2011) Mechanistic Insight into the Nitrosylation of the [4Fe−4S] Cluster of WhiB-like Proteins. Journal of the American Chemical Society, 133 (4). pp. 1112-1121. ISSN 0002-7863

Crack, JC, Green, J, Hutchings, M, Thomson, AJ and Le Brun, NE (2012) Bacterial iron-sulfur regulatory proteins as biological sensor-switches. Antioxidants & Redox Signaling, 17. pp. 1215-1231. ISSN 1523-0864

Crack, Jason, Hutchings, Matthew, Thomson, Andrew and Le Brun, Nicolas (2016) Biochemical properties of Paracoccus denitrificans FnrP:Reactions with molecular oxygen and nitric oxide. JBIC Journal of Biological Inorganic Chemistry, 21 (1). pp. 71-82. ISSN 0949-8257

Crack, Jason, Svistunenko, Dimitri A., Munnoch, John, Thomson, Andrew, Hutchings, Matthew and Le Brun, Nicolas (2016) Differentiated, promoter-specific response of [4Fe-4S] NsrR DNA-binding to reaction with nitric oxide. Journal of Biological Chemistry, 291. pp. 8663-8672. ISSN 0021-9258

Curson, ARJ, Rogers, R, Todd, JD, Brearley, CA and Johnston, AWB (2008) Molecular genetic analysis of a dimethylsulfoniopropionate lyase that liberates the climate-changing gas dimethylsulfide in several marine a-proteobacteria and Rhodobacter sphaeroides. Environmental Microbiology, 10 (3). pp. 757-767. ISSN 1462-2920

Curson, ARJ, Sullivan, MJ, Todd, JD and Johnston, AWB (2011) DddY, a periplasmic dimethylsulfoniopropionate lyase found in taxonomically diverse species of Proteobacteria. The ISME Journal, 5 (7). pp. 1191-1200. ISSN 1751-7362

Curson, ARJ, Sullivan, MJ, Todd, JD and Johnston, AWB (2009) Identification of genes for dimethyl sulfide production in bacteria in the gut of Atlantic Herring (Clupea harengus). ISME, 4 (1). pp. 144-146.

Curson, ARJ, Todd, JD, Sullivan, MJ and Johnston, AWB (2011) Catabolism of dimethylsulphoniopropionate: microorganisms, enzymes and genes. Nature Reviews Microbiology, 9 (12). pp. 849-859. ISSN 1740-1526

D

Dalton, KA, Thibessard, A, Hunter, JI and Kelemen, GH (2007) A novel compartment, the 'subqpical stem' of the aerial hyphae, is the location of a sigN-dependent, developmentally distinct transcription in Streptomyces coelicolor. Molecular Microbiology, 64 (3). pp. 719-737. ISSN 1365-2958

De Luca, N.G., Wexler, M., Pereira, M.J., Yeoman, K.H. and Johnston, Andy (1998) Is the fur gene of Rhizobium leguminosarum essential? FEMS Microbiology Letters, 168 (2). pp. 289-295. ISSN 0378-1097

Diaz-Mireles, E., Wexler, M., Sawers, G., Bellini, D., Todd, J.D. and Johnston, A.W.B. (2004) The Fur-like protein Mur of Rhizobium leguminosarum is a Mn2+ responsive transcriptional regulator. Microbiology, 150. pp. 1447-1456. ISSN 1465-2080

F

Ferretti, S, Paynter, S, Russell, DA, Sapsford, KE and Richardson, DJ (2000) Self-assembled monolayers: a versatile tool for the formulation of bio-surfaces. TrAC Trends in Analytical Chemistry, 19 (9). pp. 530-540.

Ferretti, S, Russell, DA, Sapsford, KE, Lee, S-K, MacCraith, BD, Oliva, AG, Vidal, M and Richardson, DJ (2000) Optical biosensing of nitrite ions using cytochrome cd1 nitrite reductase encapsulated in a sol–gel matrix. The Analyst, 125 (11). pp. 1993-1999.

Field, SJ, Thorndycroft, FH, Matorin, AD, Richardson, DJ and Watmough, NJ (2008) The Paracoccus denitrificans respiratory NO reductase (NorBC). Methods in Enzymology, 437. pp. 79-101. ISSN 1557-7988

Flock, U., Lachmann, P., Reimann, J., Watmough, N.J. and Adelroth, P. (2009) Exploring the terminal region of the proton pathway in the bacterial nitric oxide reductase. Journal of Inorganic Biochemistry, 103. pp. 845-850.

Flock, U., Watmough, N.J. and Adelroth, P. (2005) Electron/proton coupling in bacterial nitric oxide reductase during reduction of oxygen. Biochemistry, 44. pp. 10711-10719.

G

Gao, Hong, Grüschow, Sabine, Barke, Jörg, Seipke, Ryan F., Hill, Lionel M., Orivel, Jérôme, Yu, Douglas W., Hutchings, Matthew and Goss, Rebecca J. M. (2014) Filipins: the first antifungal “weed killers” identified from bacteria isolated from the trap-ant. RSC Advances, 4 (100). pp. 57267-57270. ISSN 2046-2069

Gorna, AE, Bowater, RP and Dziadek, J (2010) DNA repair systems and the pathogenesis of Mycobacterium tuberculosis: varying activities at different stages of infection. Clinical Science, 119 (5). pp. 187-202. ISSN 0143-5221

Green, RT, Todd, JD and Johnston, AWB (2013) Manganese uptake in marine bacteria; the novel MntX transporter is widespread in Roseobacters, Vibrios, Alteromonadales and the SAR11 and SAR116 clades. The ISME Journal, 7 (3). pp. 581-591. ISSN 1751-7362

Grönberg, Karin L. C., Roldán, M. Dolores, Prior, Louise, Butland, Gareth, Cheesman, Myles R., Richardson, David J., Spiro, Stephen, Thomson, Andrew J. and Watmough, Nicholas J. (1999) A low-redox potential heme in the dinuclear center of bacterial nitric oxide reductase: Implications for the evolution of energy-conserving heme−copper oxidases. Biochemistry, 38 (42). pp. 13780-13786. ISSN 0006-2960

H

Hartshorne, S., Richardson, D.J. and Simon, J. (2006) Multiple haem lyase genes indicate substrate specificity in cytochrome c biogenesis. Biochemical Society Transactions, 34. pp. 146-149. ISSN 1470-8752

Hedges, D.H.P., Richardson, D.J. and Russell, David (2004) Electrochemical control of protein monolayers at indium tin oxide surfaces for the reagentless optical biosensing of nitric oxide. Langmuir, 20. pp. 1901-1908.

Hoskisson, P.A. and Hutchings, M.I. (2006) MtrAB-LpqB: a conserved threecomponent system in actinobacteria? Trends in Microbiology, 14 (10). pp. 444-449. ISSN 1878-4380

Howat, Alexandra M., Vollmers, John, Taubert, Martin, Grob, Carolina, Dixon, Joanna L., Todd, Jonathan D., Chen, Yin, Kaster, Anne-Kristin and Murrell, J. C. (2018) Comparative Genomics and Mutational Analysis Reveals a Novel XoxF-Utilizing Methylotroph in the Roseobacter Group Isolated From the Marine Environment. Frontiers in Microbiology, 9. ISSN 1664-302X

Hsaio, H-C., Boycheva, S., Watmough, N.J. and Brittain, T. (2007) Activation of the cytochrome c peroxidase of Pseudomonas aeruginosa. The role of a heme-linked protein loop: a mutagenesis study. Journal of Inorganic Biochemistry, 101. pp. 1133-1139.

Humphreys, S., Rowley, G., Stevenson, A., Kenyon, W.J., Spector, M.P. and Roberts, M. (2003) Role of periplasmic peptidylprolyl isomerases in Salmonella enterica serovar Typhimurium virulence. Infection and Immunity, 72. pp. 5386-5388. ISSN 0019-9567

Hunt, AC, Servin-Gonzalez, L, Kelemen, GH and Buttner, MJ (2005) The bldC developmental locus of Streptomyces coelicolor encodes a member of a family of small DNA-binding proteins related to the DNA-binding domains of the MerR family. Journal of Bacteriology, 187 (2). pp. 716-728.

J

Johnston, A.W.B., Li, Y. and Ogilvie, L. (2005) Metagenomic marine nitrogen fixation - Feast or famine? Trends in Microbiology, 13. pp. 416-420. ISSN 1878-4380

Johnston, A.W.B., Yeoman, K.H. and Wexler, M. (2001) Metals and the rhizobial-legume symbiosis - Uptake, utilization and signalling. Advances in Microbial Physiology, 45. pp. 113-156.

Johnston, AWB, Todd, JD, Curson, AR, Lei, S, Nikolaidou-Katsaridou, N, Gelfand, MS and Rodionov, DA (2007) Living without Fur: the subtlety and complexity of iron-responsive gene reulgation in the symbiotic bacterium Rhizobium and other a-proteobacteria. BioMetals, 20 (3-4). pp. 1572-8773. ISSN 1572-8773

Jordan, S., Hutchings, M.I. and Mascher, T. (2008) Cell envelope stress response in Gram-positive bacteria. FEMS Microbiology Reviews, 32. pp. 107-146. ISSN 1574-6976

K

Keeble, A.H., Hemmings, A.M., James, R., Moore, G.R. and Kleanthous, C. (2002) Multistep binding of transition metals to the H-N-H endonuclease toxin colicin E9. Biochemistry, 41. pp. 10234-10244.

Kelemen, Gabriella H. (2017) Intermediate Filaments Supporting Cell Shape and Growth in Bacteria. In: Prokaryotic Cytoskeletons. Subcellular Biochemistry . Springer International Publishing, pp. 161-211. ISBN 978-3-319-53045-1

Kirkwood, M, Le Brun, N, Todd, JD and Johnston, AWB (2010) The dddP gene of Roseovarius nubinhibens encodes a novel lyase that cleaves dimethylsulfoniopropionate into acrylate plus dimethyl sulfide. Microbiology, 156 (6). pp. 1900-1906. ISSN 1350-0872

Kirkwood, M, Le Brun, NE, Todd, JD and Johnston, AWB (2010) The ddP gene of Roseovarius nubinhibens encodes a novel lyase that cleaves dimethylsulfoniopropionate into acrylate plus dimethyl sulfide. Microbiology, 156. pp. 1900-1906. ISSN 1465-2080

Kirkwood, M, Todd, JD, Rypien, KL and Johnston, AWB (2009) The opportunistic coral pathogen Aspergillus sydowii contains dddP and makes dimethyl sulfide from dimethylsulfoniopropionate. ISME, 4 (1). pp. 147-150.

Korycka-Machala, M, Rychta, E, Brzostek, A, Sayer, HR, Rumijowska-Galewicz, A, Bowater, RP and Dziadek, J (2007) Evaluation of NAD(+)-dependent DNA ligase of mycobacteria as a potential target for antibiotics. Antimicrobial Agents and Chemotherapy, 51 (8). pp. 2888-2897. ISSN 1098-6596

L

Lam, CKSCC, Jickells, TD, Richardson, DJ and Russell, DA (2006) Fluorescence-based siderophore biosensor for the determination of bioavailable iron in oceanic waters. Analytical Chemistry, 78. pp. 5040-5045. ISSN 0003-2700

Leftwich, Philip T, Clarke, Naomi VE, Hutchings, Matthew I and Chapman, Tracey (2018) Reply to Rosenberg et al: Diet, gut bacteria and assortative mating in Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 115 (10). E2154-E2155.

Li, Y., Wexler, M., Richardson, D.J., Bond, P.L. and Johnston, A.W.B. (2005) Screening a wide host-range, waste-water metagenomic library in tryptophan auxotrophs of Rhizobium leguminosarum and of Escherichia coli reveals different classes of cloned trp genes. Environmental Microbiology, 7. pp. 1927-1936. ISSN 1462-2920

Little, R, Salinas, P, Slavny, P, Clarke, TA and Dixon, R (2011) Substitutions in the redox-sensing PAS domain of the NifL regulatory protein define an inter-subunit pathway for redox signal transmission. Molecular Microbiology, 82 (1). pp. 222-235. ISSN 1365-2958

Little, Richard H., Cheesman, Myles R., Thomson, Andrew J., Greenwood, Colin and Watmough, Nicholas J. (1996) Cytochrome bo from Escherichia coli: Binding of Azide to Cu B. Biochemistry, 35 (43). pp. 13780-13787. ISSN 0006-2960

Little, Richard H., Grenga, Lucia, Saalbach, Gerhard, Howat, Alexandra M., Pfeilmeier, Sebastian, Trampari, Eleftheria and Malone, Jacob G. (2016) Adaptive remodeling of the bacterial proteome by specific ribosomal modification regulates Pseudomonas infection and niche colonisation. PLoS Genetics, 12 (2). ISSN 1553-7404

Liu, Hanruo, Smith, Andrew J.O., Lott, M. C., Bao, Y., Bowater, R. P., Reddan, J. R. and Wormstone, I. M. (2013) Sulforaphane Can Protect Lens Cells Against Oxidative Stress: Implications for Cataract Prevention. Investigative Ophthalmology & Visual Science, 54 (8). pp. 5236-5248. ISSN 0146-0404

Lucchini, S., Rowley, G., Goldberg, M.D., Hurd, D., Harrison, M. and Hinton, J.C. (2006) H-NS mediates the silencing of laterally acquired genes in bacteria. PLoS Pathogens, 2 (8). ISSN 1553-7366

M

Maillard, J., Spronk, C.A., Buchanan, G., Lyall, V., Richardson, D.J., Palmer, T., Vuister, G.W. and Sargent, F. (2007) Structural diversity in twin-arginine signal peptide-binding proteins. Proceedings of the National Academy of Sciences USA, 104 (40). pp. 15641-15646.

Majchrzak, M, Bowater, RP, Staczek, P and Parniewski, P (2006) SOS repair and DNA supercoiling influence the genetic stability of DNA triplet repeats in Escherichia coli. Journal of Molecular Biology, 364 (4). pp. 612-624. ISSN 1089-8638

Malone, Jacob (2015) Role of small colony variants in persistence of Pseudomonas aeruginosa infections in cystic fibrosis lungs. Infection and Drug Resistance, 2015 (8). pp. 237-247. ISSN 1178-6973

Marietou, A., Richardson, D.J., Cole, J. and Mohan, S. (2005) Nitrate reduction by Desulfovibrio desulfuricans: a periplasmic nitrate reductase system that lacks NapB, but includes a unique tetraheme c-type cytochrome, NapM. FEMS Microbiology Letters, 248. pp. 217-225. ISSN 1574-6968

Martínez‑Espinosa, Rosa María, Cole, Jeffrey A., Richardson, David and Watmough, Nick (2011) Enzymology and ecology of the nitrogen cycle. Biochemical Society Transactions, 39 (1). pp. 175-178. ISSN 0300-5127

Moore, JM, Bradshaw, Elizabeth, Seipke, Ryan, Hutchings, Matthew and McArthur (JIC), Michael (2012) Use and discovery of chemical elicitors that stimulate biosynthetic gene clusters in Streptomyces bacteria. Methods in Enzymology, 517. pp. 367-385. ISSN 1557-7988

O

Ogilvie, LA, Hirsch, PR and Johnston, AWB (2008) Bacterial diversity of the broadwalk 'classical' winter wheat experiment in relation to long-term fertilizer inputs. Microbial Ecology, 56 (3). pp. 525-537.

Oubrie, A., Gemeinhardt, S., Field, S., Marritt, S., Thomson, A.J., Saraste, M. and Richardson, D.J. (2002) Properties of a soluble domain of subunit C of a bacterial nitric oxide reductase. Biochemistry, 41. pp. 10858-10865.

Ozturk, M and Watmough, NJ (2011) Mutagenesis of tyrosine residues within helix VII in subunit I of the cytochrome cbb3 oxidase from Rhodobacter capsulatus. Molecular Biology Reports, 38 (5). pp. 3319-3326. ISSN 1573-4978

Ozturk, M., Gurel, E., Watmough, N.J. and Mandaci, S. (2007) Site-directed mutagenesis of five conserved residues of subunit 1 of the cytochrome cbb3 oxidase in Rhodobacter capsulatus. Journal of Biochemistry and Molecular Biology, 40. pp. 697-707. ISSN 0219-1024

P

Palmer, T and Hutchings, MI (2011) Protein secretion in Streptomyces. In: Streptomyces Molecular Biology and Biotechnology. Academic Press, Caister.

Pan, Yuting, Ni, Bing-jie, Lu, Huijie, Chandran, Kartik, Richardson, David and Yuan, Zhiguo (2015) Evaluating two concepts for the modelling of intermediates accumulation during biological denitrification in wastewater treatment. Water Research, 71. pp. 21-31. ISSN 0043-1354

Pfeilmeier, Sebastian, Saur, Isabel Marie-Luise, Rathjen, John Paul, Zipfel, Cyril and Malone, Jacob George (2016) High levels of cyclic-di-GMP in plant-associated Pseudomonas correlate with evasion of plant immunity. Molecular Plant Pathology, 17 (4). pp. 521-531. ISSN 1464-6722

Pintathong, Punyawatt, Richardson, David J., Spiro, Stephen and Choorit, Wanna (2009) Influence of metal ions and organic carbons on denitrification activity of the halotolerant bacterium, Paracoccus pantotrophus P16 a strain from shrimp pond. Electronic Journal of Biotechnology, 12. ISSN 0717-3458

Pitcher, R.S., Brittain, T. and Watmough, N.J. (2003) Complex interactions of carbon monoxide with reduced cytochrome cbb3 oxidase from Pseudomonas stutzeri. Biochemistry, 42. pp. 11263-11271.

Pitcher, R.S., Brittain, T. and Watmough, N.J. (2002) Cytochrome cbb3 Oxidase and Bacterial Microaerobic Metabolism. Biochemical Society Transactions, 30. pp. 653-658. ISSN 1470-8752

Pitcher, R.S. and Watmough, N.J. (2004) The bacterial cytochrome cbb3 oxidases. Biochimica et Biophysica Acta - Bioenergetics, 1655. pp. 388-399.

Pitts, K., Dobbin, P.S.D., Reyes-Ramirez, F., Thomson, A.J., Richardson, D.J. and Seward, H. (2003) Characterization of the Shewanella oneidensis MR-1 decaheme cytochrome MtrA: expression in Escherichia coli confers the ability to reduce soluble Fe(III) chelates. Journal of Biological Chemistry, 278. pp. 27758-27765. ISSN 1083-351X

Poock, S.R., Leach, E.R., Moir, J.W.B., Cole, J.A. and Richardson, D.J. (2002) Respiratory detoxification of nitric oxide by the cytochrome c nitrite reductase of Escherichia coli. Journal of Biological Chemistry, 277 (26). pp. 23664-23669. ISSN 0021-9258

Potter, L., Angrove, H., Richardson, D.J. and Cole, J. (2001) Nitrate reduction in the periplasm of gram-negative bacteria. Advances in Microbial Physiology, 45. pp. 51-112.

Prior, K., Hautefort, I., Hinton, J.C.D., Richardson, D.J. and Rowley, G. (2009) All Stressed Out. Salmonella Pathogenesis and Reactive Nitrogen Species. Advances in Microbial Physiology, 56. pp. 1-28.

R

Rasmussen, Tim, Brittain, Thomas, Berks, Ben C., Watmough, NJ and Thomson, AJ (2005) Formation of a cytochrome c–nitrous oxide reductase complex is obligatory for N2O reduction by Paracoccus pantotrophus. Dalton Transactions (21). p. 3501. ISSN 1477-9226

Reddy, K, Tam, M, Bowater, RP, Barber, M, Tomlinson, M, Nichol Edamura, K, Wang, Y-H and Pearson, CE (2011) Determinants of R-loop formation at convergent bidirectionally transcribed trinucleotide repeats. Nucleic Acids Research, 39 (5). pp. 1749-1762. ISSN 0305-1048

Rodionov, D.A., Gelfand, M.S., Todd, J.D., Curson, A.R.J. and Johnston, A.W.B. (2006) Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria. PLoS Computational Biology, 2 (12). ISSN 1553-7358

Runkel, Sebastian, Wells, Hannah and Rowley, Gary (2013) Living with stress: A lesson from the enteric pathogen salmonella enterica. Advances in Applied Microbiology, 83. pp. 87-144.

S

Sakowicz, T, Bowater, R and Parniewski, P (2004) Isolation, cloning and characterisation of motifs containing (GA/TC)n rpeeats from vetch, Vicia bithynica. Cellular and Molecular Biology Letters, 9. pp. 557-566. ISSN 1689-1392

Seipke, RF, Kaltenpoth, M and Hutchings, MI (2011) Streptomyces as symbionts: an emerging and widespread theme? FEMS Microbiology Reviews, 36. pp. 862-876. ISSN 1574-6976

Seipke, Ryan, Gruschow, Sabine, Goss, Rebecca and Hutchings, Matthew (2012) Isolating antifungals from fungus-growing ant symbionts using a genome-guided chemistry approach. Methods in Enzymology, 517. pp. 47-70. ISSN 1557-7988

Shi, Liang, Richardson, David, Wang, Zheming, Kerisit, Sebastien N., Rosso, Kevin M., Zachara, John M. and Fredrickson, James K. (2009) The roles of outer membrane cytochromes of Shewanella and Geobacterin extracellular electron transfer. Environmental Microbiology Reports, 1 (4). pp. 220-227. ISSN 1758-2229

Simon, J., van Spanning, R.J. and Richardson, D.J. (2008) The organisation of proton motive and non-proton motive redox loops in prokaryotic respiratory systems. Biochimica et Biophysica Acta - Bioenergetics, 1777 (12). pp. 1480-1890.

Singleton, C, White, G, Todd, JD, Marritt, S, Cheesman, M, Johnston, A and Le Brun, N (2010) Heme-responsive DNA binding by the global iron regulator Irr from Rhizobium leguminosarum. The Journal of Biological Chemistry, 285 (21). pp. 16023-16031. ISSN 1083-351X

Singleton, Chloe, Hearnshaw, Stephen, Zhou, Liang, Le Brun, Nick and Hemmings, Andrew (2009) Mechanistic insights into Cu(I) cluster transfer between the chaperone CopZ and its cognate Cu(I)-transporting P-type ATPase, CopA. Biochemical Journal, 424 (3). pp. 347-356. ISSN 0264-6021

Stark, WM, Luisi, BF and Bowater, RP (2010) Machines on Genes: Enzymes that Make, Break and Move DNA and RNA. Biochemical Society Transactions, 38 (2). pp. 381-383. ISSN 0300-5127

Stejskalová, Eva, Horáková, Petra, Vacek, Jan, Bowater, Richard P. and Fojta, Miroslav (2014) Enzyme-linked electrochemical DNA ligation assay using magnetic beads. Analytical and Bioanalytical Chemistry, 406 (17). pp. 4129-4136. ISSN 1618-2642

Stevens, J.B., De Luca, N.G., Ringer, J.P., Yeoman, K.H., Johnston, Andy and Beringer, J.E. (2000) The purMN genes of Rhizobium leguminosarum and a superficial link with siderophore production. Molecular Plant-Microbe Interactions, 13 (2). pp. 228-231. ISSN 0894-0282

Sullivan, Matthew J, Gates, Andrew J, Appia-Ayme, Corinne, Rowley, Gary and Richardson, David J (2013) Copper control of bacterial nitrous oxide emission and its impact on vitamin B12-dependent metabolism. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 110 (49). pp. 19926-31. ISSN 1091-6490

Sun, L, Curson, ARJ, Todd, JD and Johnston, AWB (2012) Diversity of DMSP transport in marine bacteria, revealed by genetic analyses. Biogeochemistry, 110 (1-3). pp. 121-130. ISSN 0168-2563

Sutcliffe, I.C. and Hutchings, M.I. (2007) Putative lipoproteins identified by bioinformatic genome analysis of Leifsonia xyli spp xyli, the causative agent of sugarcane ratoon stunting disease. Molecular Plant Pathology, 8. pp. 121-128. ISSN 1364-3703

Sutcliffe, Iain C., Harrington, Dean J. and Hutchings, Matthew I. (2012) A phylum level analysis reveals lipoprotein biosynthesis to be a fundamental property of bacteria. Protein & Cell, 3 (3). pp. 163-170. ISSN 1674-800X

T

Tawfiq Alkafaf, N.K., Yeoman, K.H., Wexler, M., Hussain, H. and Johnston, Andy (1997) Analysis of a Rhizobium leguminosarum gene encoding a protein homologous to glutathione S-transferases. Microbiology, 143 (3). pp. 813-822. ISSN 1350-0872

Taylor, C, Russell, David, Bain, Lindsey A, Richardson, David J and Spiro, Stephen (2004) Construction of a whole-cell gene reporter for the fluorescent bioassay of nitrate. Analytical Biochemistry, 328 (1). pp. 60-66. ISSN 1096-0309

Thorndycroft, F.H., Butland, G., Richardson, D.J. and Watmough, N.J. (2007) A new assay for nitric oxide reductase reveals two conserved glutamate residues form the entrance to a proton-conducting channel in the bacterial enzyme. Biochemical Journal, 401 (1). pp. 111-119. ISSN 0264-6021

Todd, J, Curson, A, Nikolaidou-Katsaraidou, N, Brearley, C, Watmough, N, Chan, Y, Bulman Page, P, Sun, L and Johnston, AWB (2010) Molecular dissection of bacterial acrylate catabolism - unexpected links with dimethylsulfoniopropionate catabolism and dimethyl sulfide production. Environmental Microbiology, 12 (2). pp. 327-343. ISSN 1462-2920

Todd, J.D., Sawers, G. and Johnston, A.W.B. (2005) Proteomic analysis reveals the wide-ranging effects of the novel, iron-responsive regulator RirA in Rhizobium leguminosarum bv. Viciae. Molecular Genetics and Genomics, 273 (2). pp. 197-206. ISSN 1617-4615

Todd, J.D., Sawers, G., Rodionov, D.A. and Johnston, A.W.B. (2006) The Rhizobium leguminosarum regulator IrrA affects the transcription of a wide range of genes in response to Fe availability. Molecular Genetics and Genomics, 275. pp. 564-577.

Todd, JD, Curson, AR, Dupont, CL, Nicholson, P and Johnston, AWB (2009) The dddP gene, encoding a novel enzyme that converts dimethylsulfoniopropionate into dimethyl sulfide, is widespread in ocean metagenomes and marine bacteria and also occurs in some Ascomycete fungi. Environmental Microbiology, 11 (6). pp. 1376-1385. ISSN 1462-2920

Todd, JD, Curson, ARJ, Kirkwood, M, Sullivan, MJ, Green, RT and Johnston, AWB (2011) DddQ, a novel, cupin-containing, dimethylsulfoniopropionate lyase in marine roseobacters and in uncultured marine bacteria. Environmental Microbiology, 13 (2). pp. 427-438. ISSN 1462-2920

Todd, JD, Kirkwood, M, Newton-Payne, S and Johnston, AWB (2012) DddW, a third DMSP lyase in a model Roseobacter marine bacterium, Ruegeria pomeroyi DSS-3. The ISME Journal, 6 (1). pp. 223-226. ISSN 1751-7362

Todd, JD, Rogers, R, You, GL, Wexler, Margaret, Bond, PL, Sun, L, Curson, ARJ, Malin, G, Steinke, M and Johnston, Andy (2007) Structural and regulatory genes required to make the gas dimethyl sulfide in bacteria. Science, 315 (5812). pp. 666-669. ISSN 1095-9203

Todd, Jonathan, Wexler, M., Sawers, G., Yeoman, K.H., Poole, Philip and Johnston, A.W.B. (2003) RirA, an iron-responsive regulator in the symbiotic bacterium Rhizobium leguminosarum. Microbiology, 148 (12). pp. 4059-4071. ISSN 1350-0872

Tropea, Alessia, Wilson, David, Cicero, Nicola, Potortì, Angela G., La Torre, Giovanna L., Dugo, Giacomo, Richardson, David and Waldron, Keith W. (2016) Development of minimal fermentation media supplementation for ethanol production using two Saccharomyces cerevisiae strains. Natural Product Research, 30 (9). pp. 1009-1016. ISSN 1478-6419

Tucker, NP, Le Brun, NE, Dixon, R and Hutchings, MI (2010) There's NO stopping NsrR, a global regulator of the bacterial NO stress response. Trends in Microbiology, 18 (4). pp. 149-156. ISSN 1878-4380

V

Van Wonderen, Jessica H, Oganesyan, Vasily S, Watmough, Nick J, Richardson, David J, Thomson, Andrew J and Cheesman, Myles R (2013) Unexpected weak magnetic exchange coupling between haem and non-haem iron in the catalytic site of nitric oxide reductase (NorBC) from Paracoccus denitrificans. Biochemical Journal, 451 (3). pp. 389-394. ISSN 0264-6021

W

Wang, Lixin, Eldred, Julie A, Sidaway, Peter, Sanderson, Julie, Smith, Andrew J. O., Bowater, Richard P, Reddan, John R and Wormstone, I Michael (2012) Sigma 1 receptor stimulation protects against oxidative damage through suppression of the ER stress responses in the human lens. Mechanisms of Ageing and Development, 133 (11-12). pp. 665-674. ISSN 0047-6374

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Wexler, M, Richardson, DJ and Bond, PL (2009) Radiolabelled proteomics to determine differential functioning of Accumulibacter during the anaerobic and aerobic phases of a bioreactor operating for enhanced biological phosphorus removal. Environmental Microbiology, 11 (12). pp. 3029-3044. ISSN 1462-2920

Wexler, M., Bond, P.L., Richardson, D.J. and Johnston, A.W.B. (2005) A wide host-range metagenomic library from a waste water treatment plant yields a novel alcohol/aldehyde dehydrogenase that allows Rhizobium leguminosarum but not Escherichia coli to grow on ethanol. Environmental Microbiology, 7 (12). pp. 1917-1926. ISSN 1462-2912

White, GF, Singleton, C, Todd, JD, Cheesman, MR, Johnston, AWB and Le Brun, NE (2011) Heme binding to the second, lower-affinity site of the global iron regulator Irr from Rhizobium leguminosarum promotes oligomerization. FEBS Journal, 278 (12). pp. 2011-2021. ISSN 1742-4658

Wilkinson, A, Day, J and Bowater, R (2001) Bacterial DNA ligases. Molecular Microbiology, 40 (6). pp. 1241-1248. ISSN 1365-2958

Wilkinson, A, Sayer, H, Bullard, D, Smith, A, Day, J, Kieser, T and Bowater, R (2003) NAD+-dependent DNA ligases of Mycobacterium tuberculosis and Streptomyces coelicolor. Proteins: Structure Function and Bioinformatics, 51 (3). pp. 321-326. ISSN 0887-3585

Wilkinson, A, Smith, A, Bullard, D, Lavesa-Curto, M, Sayer, H, Bonner, A, Hemmings, A and Bowater, R (2005) Analysis of ligation and DNA binding by Escherichia coli DNA ligase (LigA). Biochimica et Biophysica Acta - Proteins and Proteomics, 1749 (1). pp. 113-122. ISSN 1570-9639

Willemse, J., Ruban-osmialowska, B., Widdick, D., Celler, K., Hutchings, M. I., Van Wezel, G. P. and Palmer, T. (2012) Dynamic Localization of Tat Protein Transport Machinery Components in Streptomyces coelicolor. Journal of Bacteriology, 194 (22). pp. 6272-6281. ISSN 0021-9193

Woolfenden, H.C., Gates, A.J., Bocking, C., Blyth, M.G., Richardson, D.J. and Moulton, V. (2013) Modeling the effect of copper availability on bacterial denitrification. MicrobiologyOpen, 2 (5). pp. 756-765. ISSN 2045-8827

Y

Yeoman, K.H., Curson, A.R.J., Todd, J.D., Sawers, G. and Johnston, A.W.B. (2004) Evidence that the Rhizobium regulatory protein rirA binds to cis-acting iron-responsive operators (IROs) at promoters of some Fe-regulated genes. Microbiology, 150 (12). pp. 4065-4074. ISSN 1350-0872

Yeoman, K.H., Hong, G.F., Mimmack, M.L. and Johnston, Andy (1996) A region of a Sym plasmid of Rhizobium leguminosarum biovar phaseoli has similarity to prokaryotic insertion sequences and to eukaryotic integrases. Plasmid, 35 (2). pp. 121-130. ISSN 0147-619X

Yeoman, K.H., May, A.G., DeLuca, N.G., Stuckey, D.B. and Johnston, Andy (1999) A putative ECF σ factor gene, rpoI, regulates siderophore production in Rhizobium leguminosarum. Molecular Plant-Microbe Interactions, 12 (11). pp. 994-999. ISSN 0894-0282

Yeoman, K.H., Mitelheiser, S., Sawers, G. and Johnston, Andy (2003) The ECF σ factor RpoI of R. leguminosarum initiates transcription of the vbsGSO and vbsADL siderophore biosynthetic genes in vitro. FEMS Microbiology Letters, 223 (2). pp. 239-244. ISSN 0378-1097

Z

Zhu, D., Razaz, M. and Hemmings, A. (2006) MLEM deconvolution of protein X-ray diffraction images based on a multiple-PSF model. IEEE Transactions on Nanobioscience, 5 (2). pp. 95-102. ISSN 1536-1241

Zhu, D., Razaz, M., Hemmings, A. and Wang, B. (2004) Multiple point spread function modeling for deconvolution of 3D X-ray diffraction data. Journal of X-Ray Science & Technology, 12. pp. 179-194. ISSN 1095-9114