Items where Author is "Kamoun, Sophien"

Article

Madhuprakash, Jogi, Toghani, Amir Ali, Contreras, Mauricio P., Posbeyikian, Andres, Richardson, Jake, Kourelis, Jiorgos, Bozkurt, Tolga O., Webster, Michael W. and Kamoun, Sophien (2024) A disease resistance protein triggers oligomerization of its NLR helper into a hexameric resistosome to mediate innate immunity. Science Advances, 10 (45). ISSN 2375-2548

Yuen, Enoch Lok Him, Tumtas, Yasin, King, Freddie, Ibrahim, Tarhan, Chan, Lok I., Evangelisti, Edouard, Tulin, Frej, Skłenar, Jan, Menke, Frank L. H., Kamoun, Sophien, Bubeck, Doryen, Schornack, Sebastian and Bozkurt, Tolga Osman (2024) A pathogen effector co-opts a host RabGAP protein to remodel pathogen interface and subvert defense-related secretion. Science Advances, 10 (40). ISSN 2375-2548

Kourelis, Jiorgos, Schuster, Mariana, Demir, Fatih, Mattinson, Oliver, Krauter, Sonja, Kahlon, Parvinderdeep S., O’Grady, Ruby, Royston, Samantha, Bravo-Cazar, Ana Lucía, Mooney, Brian C., Huesgen, Pitter F., Kamoun, Sophien and van der Hoorn, Renier A. L. (2024) Bioengineering secreted proteases converts divergent Rcr3 orthologs and paralogs into extracellular immune co-receptors. Plant Cell, 36 (9). pp. 3260-3276. ISSN 1040-4651

Sakai, Toshiyuki, Contreras, Mauricio P., Martinez-Anaya, Claudia, Lüdke, Daniel, Kamoun, Sophien, Wu, Chih-Hang and Adachi, Hiroaki (2024) The NRC0 gene cluster of sensor and helper NLR immune receptors is functionally conserved across asterid plants. The Plant Cell, 36 (9). pp. 3344-3361. ISSN 1040-4651

Canham, James, Win, Joe and Kamoun, Sophien and GetGenome Network (2024) GetGenome: Overcoming inequalities in access to genomics technology. PLoS Biology, 22 (8). ISSN 1544-9173

Barragan, Ana Cristina, Latorre, Sergio M., Malmgren, Angus, Harant, Adeline, Win, Joe, Sugihara, Yu, Burbano, Hernán A., Kamoun, Sophien and Langner, Thorsten (2024) Multiple horizontal mini-chromosome transfers drive genome evolution of clonal blast fungus lineages. Molecular Biology and Evolution, 41 (8). ISSN 0737-4038

Zdrzałek, Rafał, Xi, Yuxuan, Langner, Thorsten, Bentham, Adam R., Petit-Houdenot, Yohann, De la Concepcion, Juan Carlos, Harant, Adeline, Shimizu, Motoki, Were, Vincent, Talbot, Nicholas J., Terauchi, Ryohei, Kamoun, Sophien and Banfield, Mark J. (2024) Bioengineering a plant NLR immune receptor with a robust binding interface toward a conserved fungal pathogen effector. Proceedings of the National Academy of Sciences of the United States of America, 121 (28). ISSN 0027-8424

Chia, Khong Sam, Kourelis, Jiorgos, Teulet, Albin, Vickers, Martin, Sakai, Toshiyuki, Walker, Joseph F., Schornack, Sebastian, Kamoun, Sophien and Carella, Philip (2024) The N-terminal domains of NLR immune receptors exhibit structural and functional similarities across divergent plant lineages. The Plant Cell, 36 (7). pp. 2491-2511. ISSN 1040-4651

Contreras, Mauricio P., Pai, Hsuan, Thompson, Rebecca, Marchal, Clemence, Claeys, Jules, Adachi, Hiroaki and Kamoun, Sophien (2024) The nucleotide-binding domain of NRC-dependent disease resistance proteins is sufficient to activate downstream helper NLR oligomerization and immune signaling. New Phytologist, 243 (1). pp. 345-361. ISSN 0028-646X

De la Concepcion, Juan Carlos, Langner, Thorsten, Fujisaki, Koki, Yan, Xia, Were, Vincent, Ching Lam, Anson Ho, Saado, Indira, Brabham, Helen J., Win, Joe, Yoshida, Kentaro, Talbot, Nicholas J., Terauchi, Ryohei, Kamoun, Sophien and Banfield, Mark J. (2024) Zinc-finger (ZiF) fold secreted effectors form a functionally diverse family across lineages of the blast fungus Magnaporthe oryzae. PLoS Pathogens, 20 (6). ISSN 1553-7366

Avissar-Whiting, Michele, Belliard, Frédérique, Bertozzi, Stefano M., Brand, Amy, Brown, Katherine, Clément-Stoneham, Géraldine, Dawson, Stephanie, Dey, Gautam, Ecer, Daniel, Edmunds, Scott C., Farley, Ashley, Fischer, Tara D., Franko, Maryrose, Fraser, James S., Funk, Kathryn, Ganier, Clarisse, Harrison, Melissa, Hatch, Anna, Hazlett, Haley, Hindle, Samantha, Hook, Daniel W., Hurst, Phil, Kamoun, Sophien, Kiley, Robert, Lacy, Michael M., LaFlamme, Marcel, Lawrence, Rebecca, Lemberger, Thomas, Leptin, Maria, Lumb, Elliott, MacCallum, Catriona J., Marcum, Christopher Steven, Marinello, Gabriele, Mendonça, Alex, Monaco, Sara, Neves, Kleber, Pattinson, Damian, Polka, Jessica K., Puebla, Iratxe, Rittman, Martyn, Royle, Stephen J., Saderi, Daniela, Sever, Richard, Shearer, Kathleen, Spiro, John E., Stern, Bodo, Taraborelli, Dario, Vale, Ron, Vasquez, Claudia G., Waltman, Ludo, Watt, Fiona M., Weinberg, Zara Y. and Williams, Mark (2024) Recommendations for accelerating open preprint peer review to improve the culture of science. PLoS Biology, 22 (2). ISSN 1544-9173

Liu, Qun, Maqbool, Abbas, Mirkin, Federico G., Singh, Yeshveer, Stevenson, Clare E. M., Lawson, David M., Kamoun, Sophien, Huang, Weijie and Hogenhout, Saskia A. (2023) Bimodular architecture of bacterial effector SAP05 that drives ubiquitin-independent targeted protein degradation. Proceedings of the National Academy of Sciences of the United States of America, 120 (49). ISSN 0027-8424

Schornack, Sebastian and Kamoun, Sophien (2023) EVO-MPMI: From fundamental science to practical applications. Current Opinion in Plant Biology, 76. ISSN 1369-5266

Contreras, Mauricio P., Lüdke, Daniel, Pai, Hsuan, Toghani, Amir Ali and Kamoun, Sophien (2023) NLR receptors in plant immunity: Making sense of the alphabet soup. EMBO Reports, 24 (10). ISSN 1469-221X

Adachi, Hiroaki, Sakai, Toshiyuki, Kourelis, Jiorgos, Pai, Hsuan, Gonzalez Hernandez, Jose L., Utsumi, Yoshinori, Seki, Motoaki, Maqbool, Abbas and Kamoun, Sophien (2023) Jurassic NLR: Conserved and dynamic evolutionary features of the atypically ancient immune receptor ZAR1. Plant Cell, 35 (10). pp. 3662-3685. ISSN 1040-4651

Bentham, Adam R., De La Concepcion, Juan Carlos, Benjumea, Javier Vega, Kourelis, Jiorgos, Jones, Sally, Mendel, Melanie, Stubbs, Jack, Stevenson, Clare E. M., Maidment, Josephine H. R., Youles, Mark, Zdrzałek, Rafał, Kamoun, Sophien and Banfield, Mark J. (2023) Allelic compatibility in plant immune receptors facilitates engineering of new effector recognition specificities. Plant Cell, 35 (10). pp. 3809-3827. ISSN 1040-4651

Ascurra, Yerisf C. Torres, Zhang, Lisha, Toghani, Amirali, Hua, Chenlei, Rangegowda, Nandeesh Jalahalli, Posbeyikian, Andres, Pai, Hsuan, Lin, Xiao, Wolters, Pieter J., Wouters, Doret, de Blok, Reinhoud, Steigenga, Niels, Paillart, Maxence J. M., Visser, Richard G. F., Kamoun, Sophien, Nürnberger, Thorsten and Vleeshouwers, Vivianne G. A. A. (2023) Functional diversification of a wild potato immune receptor at its center of origin. Science, 381 (6660). pp. 891-897. ISSN 0036-8075

Oh, Soohyun, Kim, Sejun, Park, Hyo-Jeong, Kim, Myung-Shin, Seo, Min-Ki, Wu, Chih-Hang, Lee, Hyun-Ah, Kim, Hyun-Soon, Kamoun, Sophien and Choi, Doil (2023) Nucleotide-binding leucine-rich repeat network underlies nonhost resistance of pepper against the Irish potato famine pathogen Phytophthora infestans. Plant Biotechnology Journal, 21 (7). pp. 1361-1372. ISSN 1467-7644

Maidment, Josephine H.R., Shimizu, Motoki, Bentham, Adam R., Vera, Sham, Franceschetti, Marina, Longya, Apinya, Stevenson, Clare E.M., De la Concepcion, Juan Carlos, Białas, Aleksandra, Kamoun, Sophien, Terauchi, Ryohei and Banfield, Mark J. (2023) Effector target-guided engineering of an integrated domain expands the disease resistance profile of a rice NLR immune receptor. eLife, 12. ISSN 2050-084X

Contreras, Mauricio P., Pai, Hsuan, Selvaraj, Muniyandi, Toghani, Amirali, Lawson, David M., Tumtas, Yasin, Duggan, Cian, Yuen, Enoch Lok Him, Stevenson, Clare E. M., Harant, Adeline, Maqbool, Abbas, Wu, Chih-Hang, Bozkurt, Tolga O., Kamoun, Sophien and Derevnina, Lida (2023) Resurrection of plant disease resistance proteins via helper NLR bioengineering. Science Advances, 9 (18). ISSN 2375-2548

Latorre, Sergio M., Were, Vincent M., Foster, Andrew J., Langner, Thorsten, Malmgren, Angus, Harant, Adeline, Asuke, Soichiro, Reyes-Avila, Sarai, Gupta, Dipali Rani, Jensen, Cassandra, Ma, Weibin, Mahmud, Nur Uddin, Mehebub, Md Shåbab, Mulenga, Rabson M., Muzahid, Abu Naim Md, Paul, Sanjoy Kumar, Rabby, S. M.Fajle, Al Mahbub Rahat, Abdullah, Ryder, Lauren, Shrestha, Ram-Krishna, Sichilima, Suwilanji, Soanes, Darren M., Singh, Pawan Kumar, Bentley, Alison R., Saunders, Diane G. O., Tosa, Yukio, Croll, Daniel, Lamour, Kurt H., Islam, Tofazzal, Tembo, Batiseba, Win, Joe, Talbot, Nicholas J., Burbano, Hernán A. and Kamoun, Sophien (2023) Genomic surveillance uncovers a pandemic clonal lineage of the wheat blast fungus. PLoS Biology, 21 (4). ISSN 1544-9173

Kourelis, Jiorgos, Marchal, Clemence, Posbeyikian, Andres, Harant, Adeline and Kamoun, Sophien (2023) NLR immune receptor–nanobody fusions confer plant disease resistance. Science, 379 (6635). pp. 934-939. ISSN 0036-8075

Ahn, Hee-Kyung, Lin, Xiao, Olave-Achury, Andrea Carolina, Derevnina, Lida, Contreras, Mauricio P., Kourelis, Jiorgos, Wu, Chih-Hang, Kamoun, Sophien and Jones, Jonathan D. G. (2023) Effector-dependent activation and oligomerization of plant NRC class helper NLRs by sensor NLR immune receptors Rpi-amr3 and Rpi-amr1. EMBO Journal, 42 (5). ISSN 0261-4189

Contreras, Mauricio P., Pai, Hsuan, Tumtas, Yasin, Duggan, Cian, Yuen, Enoch Lok Him, Vergara Cruces, Angel, Kourelis, Jiorgos, Ahn, Hee Kyung, Lee, Kim Teng, Wu, Chih Hang, Bozkurt, Tolga O., Derevnina, Lida and Kamoun, Sophien (2023) Sensor NLR immune proteins activate oligomerization of their NRC helpers in response to plant pathogens. EMBO Journal, 42 (5). ISSN 0261-4189

Adachi, Hiroaki, Sakai, Toshiyuki, Harant, Adeline, Pai, Hsuan, Honda, Kodai, Toghani, Amir Ali, Claeys, Jules, Duggan, Cian, Bozkurt, Tolga O., Wu, Chih-hang and Kamoun, Sophien (2023) An atypical NLR protein modulates the NRC immune receptor network in Nicotiana benthamiana. PLoS Genetics, 19 (1). ISSN 1553-7390

Sugihara, Yu, Abe, Yoshiko, Takagi, Hiroki, Abe, Akira, Shimizu, Motoki, Ito, Kazue, Kanzaki, Eiko, Oikawa, Kaori, Kourelis, Jiorgos, Langner, Thorsten, Win, Joe, Białas, Aleksandra, Lüdke, Daniel, Contreras, Mauricio P., Chuma, Izumi, Saitoh, Hiromasa, Kobayashi, Michie, Zheng, Shuan, Tosa, Yukio, Banfield, Mark J., Kamoun, Sophien, Terauchi, Ryohei and Fujisaki, Koki (2023) Disentangling the complex gene interaction networks between rice and the blast fungus identifies a new pathogen effector. PLoS Biology, 21 (1). ISSN 1545-7885

Marchal, Clemence, Pai, Hsuan, Kamoun, Sophien and Kourelis, Jiorgos (2022) Emerging principles in the design of bioengineered made-to-order plant immune receptors. Current Opinion in Plant Biology, 70. ISSN 1369-5266

Zess, Erin K., Dagdas, Yasin F., Peers, Esme, Maqbool, Abbas, Banfield, Mark J., Bozkurt, Tolga O. and Kamoun, Sophien (2022) Regressive evolution of an effector following a host jump in the Irish potato famine pathogen lineage. PLoS Pathogens, 18 (10). ISSN 1553-7374

Concepcion, Juan Carlos De la, Fujisaki, Koki, Bentham, Adam R., Mireles, Neftaly Cruz, Hernandez, Victor Sanchez de Medina, Shimizu, Motoki, Lawson, David M., Kamoun, Sophien, Terauchi, Ryohei and Banfield, Mark J. (2022) A blast fungus zinc-finger fold effector binds to a hydrophobic pocket in host Exo70 proteins to modulate immune recognition in rice. Proceedings of the National Academy of Sciences, 119 (43). ISSN 0027-8424

Adachi, Hiroaki and Kamoun, Sophien (2022) NLR receptor networks in plants. Essays in Biochemistry, 66 (5). 541–549. ISSN 0071-1365

Kourelis, Jiorgos, Contreras, Mauricio P., Harant, Adeline, Pai, Hsuan, Lüdke, Daniel, Adachi, Hiroaki, Derevnina, Lida, Wu, Chih-Hang and Kamoun, Sophien (2022) The helper NLR immune protein NRC3 mediates the hypersensitive cell death caused by the cell-surface receptor Cf-4. PLoS Genetics, 18 (9). ISSN 1553-7390

Lin, Xiao, Olave-Achury, Andrea, Heal, Robert, Pais, Marina, Witek, Kamil, Ahn, Hee-Kyung, Zhao, He, Bhanvadia, Shivani, Karki, Hari S., Song, Tianqiao, Wu, Chih-Hang, Adachi, Hiroaki, Kamoun, Sophien, Vleeshouwers, Vivianne G. A. A. and Jones, Jonathan D. G. (2022) A potato late blight resistance gene protects against multiple Phytophthora species by recognizing a broadly conserved RXLR-WY effector. Molecular Plant, 15 (9). pp. 1457-1469. ISSN 1752-9867

Bentley, Alison R., Donovan, Jason, Sonder, Kai, Baudron, Frédéric, Lewis, Janet M., Voss, Rachel, Rutsaert, Pieter, Poole, Nigel, Kamoun, Sophien, Saunders, Diane G. O., Hodson, David, Hughes, David P., Negra, Christine, Ibba, Maria Itria, Snapp, Sieglinde, Sida, Tesfaye Shiferaw, Jaleta, Moti, Tesfaye, Kindie, Becker-Reshef, Inbal and Govaerts, Bram (2022) Near- to long-term measures to stabilize global wheat supplies and food security. Nature Food, 3 (7). pp. 483-486. ISSN 2662-1355

Shimizu, Motoki, Hirabuchi, Akiko, Sugihara, Yu, Abe, Akira, Takeda, Takumi, Kobayashi, Michie, Hiraka, Yukie, Kanzaki, Eiko, Oikawa, Kaori, Saitoh, Hiromasa, Langner, Thorsten, Banfield, Mark J., Kamoun, Sophien and Terauchi, Ryohei (2022) A genetically linked pair of NLR immune receptors shows contrasting patterns of evolution. Proceedings of the National Academy of Sciences of the United States of America, 119 (27). ISSN 0027-8424

Kamikawa, Ryoma, Mochizuki, Takako, Sakamoto, Mika, Tanizawa, Yasuhiro, Nakayama, Takuro, Onuma, Ryo, Cenci, Ugo, Moog, Daniel, Speak, Samuel, Sarkozi, Krisztina, Toseland, Andrew, van Oosterhout, Cock, Oyama, Kaori, Kato, Misako, Kume, Keitaro, Kayama, Motoki, Azuma, Tomonori, Ishii, Ken-ichiro, Miyashita, Hideaki, Henrissat, Bernard, Lombard, Vincent, Win, Joe, Kamoun, Sophien, Kashiyama, Yuichiro, Mayama, Shigeki, Miyagishima, Shin-ya, Tanifuji, Goro, Mock, Thomas and Nakamura, Yasukazu (2022) Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida. Science Advances, 8 (17). ISSN 2375-2548

Harant, Adeline, Pai, Hsuan, Sakai, Toshiyuki, Kamoun, Sophien and Adachi, Hiroaki (2022) A vector system for fast-forward studies of the HOPZ-ACTIVATED RESISTANCE1 (ZAR1) resistosome in the model plant Nicotiana benthamiana. Plant Physiology, 188 (1). pp. 70-80. ISSN 0032-0889

De La Concepcion, Juan Carlos, Vega Benjumea, Javier, Bialas, Aleksandra, Terauchi, Ryohei, Kamoun, Sophien and Banfield, Mark J. (2021) Functional diversification gave rise to allelic specialization in a rice NLR immune receptor pair. eLife, 10. ISSN 2050-084X

Bentham, Adam R., Petit-Houdenot, Yohann, Win, Joe, Chuma, Izumi, Terauchi, Ryohei, Banfield, Mark J., Kamoun, Sophien and Langner, Thorsten (2021) A single amino acid polymorphism in a conserved effector of the multihost blast fungus pathogen expands host-target binding spectrum. PLoS Pathogens, 17 (11). ISSN 1553-7374

Kourelis, Jiorgos, Sakai, Toshiyuki, Adachi, Hiroaki and Kamoun, Sophien (2021) RefPlantNLR is a comprehensive collection of experimentally validated plant disease resistance proteins from the NLR family. PLoS Biology, 19 (10). ISSN 1545-7885

Huang, Weijie, MacLean, Allyson M., Sugio, Akiko, Maqbool, Abbas, Busscher, Marco, Cho, Shu-Ting, Kamoun, Sophien, Kuo, Chih-Horng, Immink, Richard G. H. and Hogenhout, Saskia A. (2021) Parasitic modulation of host development by ubiquitin-independent protein degradation. Cell, 184 (20). 5201-5214.e12. ISSN 0092-8674

Duggan, Cian, Moratto, Eleonora, Savage, Zachary, Hamilton, Eranthika, Adachi, Hiroaki, Wu, Chih-Hang, Leary, Alexandre Y., Tumtas, Yasin, Rothery, Stephen M., Maqbool, Abbas, Nohut, Seda, Martin, Toby Ross, Kamoun, Sophien and Bozkurt, Tolga Osman (2021) Dynamic localization of a helper NLR at the plant–pathogen interface underpins pathogen recognition. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 118 (34). ISSN 0027-8424

Derevnina, Lida, Contreras, Mauricio P., Adachi, Hiroaki, Upson, Jessica, Vergara Cruces, Angel, Xie, Rongrong, Skłenar, Jan, Menke, Frank L. H., Mugford, Sam T., MacLean, Dan, Ma, Wenbo, Hogenhout, Saskia, Goverse, Aska, Maqbool, Abbas, Wu, Chih-Hang and Kamoun, Sophien (2021) Plant pathogens convergently evolved to counteract redundant nodes of an NLR immune receptor network. PLoS Biology, 19 (8). ISSN 1545-7885

Pandey, Pooja, Leary, Alexandre Y., Tumtas, Yasin, Savage, Zachary, Dagvadorj, Bayantes, Duggan, Cian, Yuen, Enoch L. H., Sanguankiattichai, Nattapong, Tan, Emily, Khandare, Virendrasinh, Connerton, Amber J., Yunusov, Temur, Madalinski, Mathias, Mirkin, Federico Gabriel, Schornack, Sebastian, Dagdas, Yasin, Kamoun, Sophien and Bozkurt, Tolga O. (2021) An oomycete effector subverts host vesicle trafficking to channel starvation-induced autophagy to the pathogen interface. eLife, 10. ISSN 2050-084X

Wu, C. H. and Kamoun, S. (2021) Tomato Prf requires NLR helpers NRC2 and NRC3 to confer resistance against the bacterial speck pathogen Pseudomonas syringae pv. tomato. Acta Horticulturae, 1316 (1316). pp. 61-66. ISSN 0567-7572

Białas, Aleksandra, Langner, Thorsten, Harant, Adeline, Contreras, Mauricio P, Stevenson, Clare E. M., Lawson, David M, Sklenar, Jan, Kellner, Ronny, Moscou, Matthew J, Terauchi, Ryohei, Banfield, Mark J and Kamoun, Sophien (2021) Two NLR immune receptors acquired high-affinity binding to a fungal effector through convergent evolution of their integrated domain. eLife, 10. ISSN 2050-084X

Monino‐Lopez, Daniel, Nijenhuis, Maarten, Kodde, Linda, Kamoun, Sophien, Salehian, Hamed, Schentsnyi, Kyrylo, Stam, Remco, Lokossou, Anoma, Abd‐El‐Haliem, Ahmed, Visser, Richard G. F. and Vossen, Jack H. (2021) Allelic variants of the NLR protein Rpi-chc1 differentially recognize members of the Phytophthora infestans PexRD12/31 effector superfamily through the leucine-rich repeat domain. The Plant Journal, 107 (1). pp. 182-197. ISSN 0960-7412

Petre, Benjamin, Contreras, Mauricio P., Bozkurt, Tolga O., Schattat, Martin H., Sklenar, Jan, Schornack, Sebastian, Abd-El-Haliem, Ahmed, Castells-Graells, Roger, Lozano-Durán, Rosa, Dagdas, Yasin F., Menke, Frank L. H., Jones, Alexandra M. E., Vossen, Jack H., Robatzek, Silke, Kamoun, Sophien and Win, Joe (2021) Host-interactor screens of Phytophthora infestans RXLR proteins reveal vesicle trafficking as a major effector-targeted process. The Plant Cell, 33 (5). 1447–1471. ISSN 1040-4651

Langner, Thorsten, Harant, Adeline, Gomez-Luciano, Luis B., Shrestha, Ram K., Malmgren, Angus, Latorre, Sergio M., Burbano, Hernán A., Win, Joe and Kamoun, Sophien (2021) Genomic rearrangements generate hypervariable mini-chromosomes in host-specific isolates of the blast fungus. PLoS Genetics, 17 (2). ISSN 1553-7390

Witek, Kamil, Lin, Xiao, Karki, Hari S., Jupe, Florian, Witek, Agnieszka I., Steuernagel, Burkhard, Stam, Remco, Van Oosterhout, Cock, Fairhead, Sebastian, Heal, Robert, Cocker, Jonathan M., Bhanvadia, Shivani, Barrett, William, Wu, Chih-Hang, Adachi, Hiroaki, Song, Tianqiao, Kamoun, Sophien, Vleeshouwers, Vivianne G. A. A., Tomlinson, Laurence, Wulff, Brande B. H. and Jones, Jonathan D. G. (2021) A complex resistance locus in Solanum americanum recognizes a conserved Phytophthora effector. Nature Plants, 7 (2). pp. 198-208. ISSN 2055-026X

Maidment, Josephine H. R., Franceschetti, Marina, Maqbool, Abbas, Saitoh, Hiromasa, Jantasuriyarat, Chatchawan, Kamoun, Sophien, Terauchi, Ryohei and Banfield, Mark J. (2021) Multiple variants of the fungal effector AVR-Pik bind the HMA domain of the rice protein OsHIPP19, providing a foundation to engineer plant defense. Journal of Biological Chemistry, 296. ISSN 0021-9258

Zdrzałek, Rafał, Kamoun, Sophien, Terauchi, Ryohei, Saitoh, Hiromasa and Banfield, Mark J. (2020) The rice NLR pair Pikp-1/Pikp-2 initiates cell death through receptor cooperation rather than negative regulation. PLoS One, 15 (9). ISSN 1932-6203

Adachi, Hiroaki, Białas, Aleksandra and Kamoun, Sophien (2020) How to trick a plant pathogen? Biochemist, 42 (4). pp. 14-18. ISSN 0954-982X

Petit-Houdenot, Yohann, Langner, Thorsten, Harant, Adeline, Win, Joe and Kamoun, Sophien (2020) A clone resource of Magnaporthe oryzae effectors that share sequence and structural similarities across host-specific lineages. Molecular Plant-Microbe Interactions, 33 (8). pp. 1032-1035. ISSN 0894-0282

Paulus, Judith K, Kourelis, Jiorgos, Ramasubramanian, Selva, Homma, Felix, Godson, Alice, Hörger, Anja C, Hong, Tram Ngoc, Krahn, Daniel, Ossorio Carballo, Laura, Wang, Shuaishuai, Win, Joe, Smoker, Matthew, Kamoun, Sophien, Dong, Suomeng and van der Hoorn, Renier A L (2020) Extracellular proteolytic cascade in tomato activates immune protease Rcr3. Proceedings of the National Academy of Sciences of the United States of America, 117 (29). pp. 17409-17417. ISSN 1091-6490

Latorre, Sergio M., Reyes-Avila, C. Sarai, Malmgren, Angus, Win, Joe, Kamoun, Sophien and Burbano, Hernán A. (2020) Differential loss of effector genes in three recently expanded pandemic clonal lineages of the rice blast fungus. BMC Biology, 18. ISSN 1741-7007

Lin, Xiao, Wang, Shumei, De Rond, Laura, Bertolin, Nicoletta, Wouters, Roland H. M., Wouters, Doret, Domazakis, Emmanouil, Bitew, Mulusew Kassa, Win, Joe, Dong, Suomeng, Visser, Richard G. F., Birch, Paul, Kamoun, Sophien and Vleeshouwers, Vivianne G. A. A. (2020) Divergent evolution of PcF/SCR74 effectors in oomycetes is associated with distinct recognition patterns in solanaceous plants. mBIO, 11 (3). pp. 1-12. ISSN 2150-7511

Dhaouadi, Sabrine, Win, Joe, Mougou, Amira Hamdane, Harant, Adeline, Kamoun, Sophien and Rhouma, Ali (2020) Genome sequences of plant-associated rhodococcus sp. isolates from Tunisia. Microbiology Resource Announcements, 9 (23).

Gao, Chuyun, Xu, Huawei, Huang, Jie, Sun, Biying, Zhang, Fan, Savage, Zachary, Duggan, Cian, Yan, Tingxiu, Wu, Chih-Hang, Wang, Yuanchao, Vleeshouwers, Vivianne G. A. A., Kamoun, Sophien, Bozkurt, Tolga O. and Dong, Suomeng (2020) Pathogen manipulation of chloroplast function triggers a light-dependent immune recognition. Proceedings of the National Academy of Sciences of the United States of America, 117 (17). pp. 9613-9620. ISSN 1091-6490

Bozkurt, Tolga O. and Kamoun, Sophien (2020) The plant-pathogen haustorial interface at a glance. Journal of Cell Science, 133 (5). ISSN 0021-9533

Wu, Chih-Hang, Adachi, Hiroaki, De la Concepcion, Juan Carlos, Castells-Graells, Roger, Nekrasov, Vladimir and Kamoun, Sophien (2020) NRC4 gene cluster is not essential for bacterial flagellin-triggered immunity. Plant Physiology, 182 (1). pp. 455-459. ISSN 0032-0889

Adachi, Hiroaki, Contreras, Mauricio, Harant, Adeline, Wu, Chih-Hang, Derevnina, Lida, Sakai, Toshiyuki, Duggan, Cian, Moratto, Eleonora, Bozkurt, Tolga O., Maqbool, Abbas, Win, Joe and Kamoun, Sophien (2019) An N-terminal motif in NLR immune receptors is functionally conserved across distantly related plant species. eLife, 8. ISSN 2050-084X

De la Concepcion, Juan Carlos, Franceschetti, Marina, MacLean, Dan, Terauchi, Ryohei, Kamoun, Sophien and Banfield, Mark J (2019) Protein engineering expands the effector recognition profile of a rice NLR immune receptor. eLife, 8. ISSN 2050-084X

Varden, Freya A, Saitoh, Hiromasa, Yoshino, Kae, Franceschetti, Marina, Kamoun, Sophien, Terauchi, Ryohei and Banfield, Mark J (2019) Cross-reactivity of a rice NLR immune receptor to distinct effectors from the rice blast pathogen Magnaporthe oryzae provides partial disease resistance. The Journal of Biological Chemistry, 294 (35). pp. 13006-13016. ISSN 0021-9258

Adachi, Hiroaki, Derevnina, Lida and Kamoun, Sophien (2019) NLR singletons, pairs, and networks: Evolution, assembly, and regulation of the intracellular immunoreceptor circuitry of plants. Current Opinion in Plant Biology, 50. pp. 121-131. ISSN 1369-5266

Zess, Erin K, Jensen, Cassandra, Cruz-Mireles, Neftaly, De la Concepcion, Juan Carlos, Sklenar, Jan, Stephani, Madlen, Imre, Richard, Roitinger, Elisabeth, Hughes, Richard, Belhaj, Khaoula, Mechtler, Karl, Menke, Frank L H, Bozkurt, Tolga, Banfield, Mark J, Kamoun, Sophien, Maqbool, Abbas and Dagdas, Yasin F (2019) N-terminal β-strand underpins biochemical specialization of an ATG8 isoform. PLoS Biology, 17 (7). ISSN 1545-7885

Carvajal-Yepes, M., Cardwell, K., Nelson, A., Garrett, K. A., Giovani, B., Saunders, D. G. O., Kamoun, S., Legg, J. P., Verdier, V., Lessel, J., Neher, R. A., Day, R., Pardey, P., Gullino, M. L., Records, A. R., Bextine, B., Leach, J. E., Staiger, S. and Tohme, J. (2019) A global surveillance system for crop diseases. Science, 364 (6447). pp. 1237-1239. ISSN 0036-8075

Kamoun, Sophien, Talbot, Nicholas J. and Islam, M. Tofazzal (2019) Plant health emergencies demand open science: Tackling a cereal killer on the run. PLoS Biology, 17 (6). ISSN 1545-7885

Adachi, Hiroaki, Kamoun, Sophien and Maqbool, Abbas (2019) A resistosome-activated ‘death switch’. Nature Plants, 5. 457–458. ISSN 2055-026X

Valent, Barbara, Farman, Mark, Tosa, Yukio, Begerow, Dominik, Fournier, Elisabeth, Gladieux, Pierre, Islam, M. Tofazzal, Kamoun, Sophien, Kemler, Martin, Kohn, Linda M., Lebrun, Marc-Henri, Stajich, Jason E., Talbot, Nicholas J., Terauchi, Ryohei, Tharreau, Didier and Zhang, Ning (2019) Pyricularia graminis-tritici is not the correct species name for the wheat blast fungus: response to Ceresini et al. (MPP 20:2):Wheat blast - Pyricularia oryzae Triticum. Molecular Plant Pathology, 20 (2). pp. 173-179. ISSN 1464-6722

Zess, Erin K., Białas, Aleksandra and Kamoun, Sophien (2019) Old fungus, new trick. Nature Microbiology, 4 (2). pp. 210-211. ISSN 2058-5276

Derevnina, Lida, Kamoun, Sophien and Wu, Chih-Hang (2019) Dude, where is my mutant?:Nicotiana benthamiana meets forward genetics. New Phytologist, 221 (2). pp. 607-610. ISSN 0028-646X

De la Concepcion, Juan Carlos, Franceschetti, Marina, Maqbool, Abbas, Saitoh, Hiromasa, Terauchi, Ryohei, Kamoun, Sophien and Banfield, Mark J (2018) Polymorphic residues in rice NLRs expand binding and response to effectors of the blast pathogen. Nature Plants, 4. 576–585. ISSN 2055-026X

Domazakis, Emmanouil, Wouters, Doret, Visser, Richard G. F., Kamoun, Sophien, Joosten, Matthieu H. A. J. and Vleeshouwers, Vivianne G. A. A. (2018) The ELR-SOBIR1 complex functions as a two-component receptor-like kinase to mount defense against Phytophthora infestans. Molecular Plant-Microbe Interactions, 31 (8). pp. 795-802. ISSN 0894-0282

Langner, Thorsten, Kamoun, Sophien and Belhaj, Khaoula (2018) CRISPR crops: Plant genome editing toward disease resistance. Annual Review of Phytopathology, 56. pp. 479-512. ISSN 0066-4286

Upson, Jessica L, Zess, Erin K, Białas, Aleksandra, Wu, Chih-Hang and Kamoun, Sophien (2018) The coming of age of EvoMPMI: Evolutionary molecular plant-microbe interactions across multiple timescales. Current Opinion in Plant Biology, 44. pp. 108-116. ISSN 1369-5266

Pais, Marina, Yoshida, Kentaro, Giannakopoulou, Artemis, Pel, Mathieu A, Cano, Liliana M, Oliva, Ricardo F, Witek, Kamil, Lindqvist-Kreuze, Hannele, Vleeshouwers, Vivianne G A A and Kamoun, Sophien (2018) Gene expression polymorphism underpins evasion of host immunity in an asexual lineage of the Irish potato famine pathogen. BMC Evolutionary Biology, 18. ISSN 1471-2148

Dagdas, Yasin F., Pandey, Pooja, Tumtas, Yasin, Sanguankiattichai, Nattapong, Belhaj, Khaoula, Duggan, Cian, Leary, Alexandre Y., Segretin, Maria E., Contreras, Mauricio P., Savage, Zachary, Khandare, Virendrasinh S., Kamoun, Sophien and Bozkurt, Tolga O. (2018) Host autophagy machinery is diverted to the pathogen interface to mediate focal defense responses against the Irish potato famine pathogen. eLife, 7. ISSN 2050-084X

Dagdas, Yasin F, Pandey, Pooja, Tumtas, Yasin, Sanguankiattichai, Nattapong, Belhaj, Khaoula, Duggan, Cian, Leary, Alexandre Y, Segretin, Maria E, Contreras, Mauricio P, Savage, Zachary, Khandare, Virendrasinh S, Kamoun, Sophien and Bozkurt, Tolga O (2018) Host autophagy machinery is diverted to the pathogen interface to mediate focal defense responses against the Irish potato famine pathogen. eLife, 7. ISSN 2050-084X

Wu, Chih-Hang, Derevnina, Lida and Kamoun, Sophien (2018) Receptor networks underpin plant immunity. Science, 360 (6395). pp. 1300-1301. ISSN 0036-8075

Langner, Thorsten, Białas, Aleksandra and Kamoun, Sophien (2018) The blast fungus decoded: Genomes in flux. mBIO, 9 (2). ISSN 2150-7511

Weiß, Clemens L, Pais, Marina, Cano, Liliana M, Kamoun, Sophien and Burbano, Hernán A (2018) nQuire: a statistical framework for ploidy estimation using next generation sequencing. BMC Bioinformatics, 19. ISSN 1471-2105

Białas, Aleksandra, Zess, Erin K., De la Concepcion, Juan Carlos, Franceschetti, Marina, Pennington, Helen G., Yoshida, Kentaro, Upson, Jessica L., Chanclud, Emilie, Wu, Chih-Hang, Langner, Thorsten, Maqbool, Abbas, Varden, Freya A., Derevnina, Lida, Belhaj, Khaoula, Fujisaki, Koki, Saitoh, Hiromasa, Terauchi, Ryohei, Banfield, Mark J. and Kamoun, Sophien (2017) Lessons in effector and NLR biology of plant-microbe systems. Molecular Plant-Microbe Interactions, 31 (1). pp. 34-45. ISSN 0894-0282

Kamoun, Sophien, Lozano-Durán, Rosa and Nakhleh, Luay (2017) Stranger in a strange land: the experiences of immigrant researchers. Genome Biology, 18. ISSN 1474-760X

Kobayashi, Michie, Hiraka, Yukie, Abe, Akira, Yaegashi, Hiroki, Natsume, Satoshi, Kikuchi, Hideko, Takagi, Hiroki, Saitoh, Hiromasa, Win, Joe, Kamoun, Sophien and Terauchi, Ryohei (2017) Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews. BMC Genomics, 18. ISSN 1471-2164

Tamiru, Muluneh, Natsume, Satoshi, Takagi, Hiroki, White, Benjamen, Yaegashi, Hiroki, Shimizu, Motoki, Yoshida, Kentaro, Uemura, Aiko, Oikawa, Kaori, Abe, Akira, Urasaki, Naoya, Matsumura, Hideo, Babil, Pachakkil, Yamanaka, Shinsuke, Matsumoto, Ryo, Muranaka, Satoru, Girma, Gezahegn, Lopez-Montes, Antonio, Gedil, Melaku, Bhattacharjee, Ranjana, Abberton, Michael, Kumar, P Lava, Rabbi, Ismail, Tsujimura, Mai, Terachi, Toru, Haerty, Wilfried, Corpas, Manuel, Kamoun, Sophien, Kahl, Günter, Takagi, Hiroko, Asiedu, Robert and Terauchi, Ryohei (2017) Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination. BMC Biology, 15. ISSN 1741-7007

Wu, Chih-Hang, Abd-El-Haliem, Ahmed, Bozkurt, Tolga O., Belhaj, Khaoula, Terauchi, Ryohei, Vossen, Jack H. and Kamoun, Sophien (2017) NLR network mediates immunity to diverse plant pathogens. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 114 (30). 8113–8118. ISSN 0027-8424

Michelmore, Richard, Coaker, Gitta, Bart, Rebecca, Beattie, Gwyn, Bent, Andrew, Bruce, Toby, Cameron, Duncan, Dangl, Jeffery, Dinesh-Kumar, Savithramma, Edwards, Rob, Eves-van Den Akker, Sebastian, Gassmann, Walter, Greenberg, Jean T., Hanley-Bowdoin, Linda, Harrison, Richard J., Harvey, Jagger, He, Ping, Huffaker, Alisa, Hulbert, Scot, Innes, Roger, Jones, Jonathan D. G., Kaloshian, Isgouhi, Kamoun, Sophien, Katagiri, Fumiaki, Leach, Jan, Ma, Wenbo, McDowell, John, Medford, June, Meyers, Blake, Nelson, Rebecca, Oliver, Richard, Qi, Yiping, Saunders, Diane, Shaw, Michael, Smart, Christine, Subudhi, Prasanta, Torrance, Lesley, Tyler, Bret, Valent, Barbara and Walsh, John (2017) Foundational and translational research opportunities to improve plant health. Molecular Plant-Microbe Interactions, 30 (7). pp. 515-516. ISSN 0894-0282

Franceschetti, Marina, Maqbool, Abbas, Jiménez-Dalmaroni, Maximiliano J., Pennington, Helen G., Kamoun, Sophien and Banfield, Mark J. (2017) Effectors of filamentous plant pathogens: Commonalities amid diversity. Microbiology and Molecular Biology Reviews, 81 (2). ISSN 1092-2172

Kamoun, Sophien (2017) Can a biologist fix a smartphone?—Just hack it! BMC Biology, 15. ISSN 1741-7007

Nekrasov, Vladimir, Wang, Congmao, Win, Joe, Lanz, Christa, Weigel, Detlef and Kamoun, Sophien (2017) Rapid generation of a transgene-free powdery mildew resistant tomato by genome deletion. Scientific Reports, 7. ISSN 2045-2322

Prince, David C., Rallapalli, Ghanasyam, Xu, Deyang, Schoonbeek, Henk-jan, Çevik, Volkan, Asai, Shuta, Kemen, Eric, Cruz-Mireles, Neftaly, Kemen, Ariane, Belhaj, Khaoula, Schornack, Sebastian, Kamoun, Sophien, Holub, Eric B., Halkier, Barbara A. and Jones, Jonathan D. G. (2017) Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana. BMC Biology, 15. ISSN 1741-7007

Kellner, Ronny, De La Concepcion, Juan Carlos, Maqbool, Abbas, Kamoun, Sophien and Dagdas, Yasin F. (2017) ATG8 expansion: A driver of selective autophagy diversification? Trends in Plant Science, 22 (3). pp. 204-214. ISSN 1360-1385

Belhaj, Khaoula, Cano, Liliana M, Prince, David C, Kemen, Ariane, Yoshida, Kentaro, Dagdas, Yasin F, Etherington, Graham J, Schoonbeek, Henk-Jan, van Esse, H Peter, Jones, Jonathan D G, Kamoun, Sophien and Schornack, Sebastian (2017) Arabidopsis late blight:Infection of a nonhost plant by Albugo laibachii enables full colonization by Phytophthora infestans. Cellular Microbiology, 19 (1). ISSN 1462-5814

Derevnina, Lida, Dagdas, Yasin F., De La Concepcion, Juan Carlos, Bialas, Aleksandra, Kellner, Ronny, Petre, Benjamin, Domazakis, Emmanouil, Du, Juan, Wu, Chih-Hang, Lin, Xiao, Aguilera-Galvez, Carolina, Cruz-Mireles, Neftaly, Vleeshouwers, Vivianne G. A. A. and Kamoun, Sophien (2016) Nine things to know about elicitins. New Phytologist, 212 (4). 888–895. ISSN 0028-646X

Hopes, Amanda, Nekrasov, Vladimir, Kamoun, Sophien and Mock, Thomas (2016) Editing of the urease gene by CRISPR-Cas in the diatom Thalassiosira pseudonana. Plant Methods, 12 (1). ISSN 1746-4811

Derevnina, Lida, Petre, Benjamin, Kellner, Ronny, Dagdas, Yasin, Sarowar, Mohammad Nasif, Giannakopoulou, Artemis, De la Concepcion, Juan Carlos, Chaparro-Garcia, Angela, Pennington, Helen G., van West, Pieter and Kamoun, Sophien (2016) Emerging oomycete threats to plants and animals. Philosophical Transactions of the Royal Society B, 371 (1709). ISSN 1471-2970

Islam, M. Tofazzal, Croll, Daniel, Gladieux, Pierre, Soanes, Darren M., Persoons, Antoine, Bhattacharjee, Pallab, Hossain, Md. Shaid, Gupta, Dipali Rani, Rahman, Md. Mahbubur, Mahboob, M. Golam, Cook, Nicola, Salam, Moin U., Surovy, Musrat Zahan, Sancho, Vanessa Bueno, Maciel, João Leodato Nunes, Nhanijúnior, Antonio, Castroagudín, Vanina Lilián, de Assis Reges, Juliana T., Ceresini, Paulo Cezar, Ravel, Sebastien, Kellner, Ronny, Fournier, Elisabeth, Tharreau, Didier, Lebrun, Marc-Henri, McDonald, Bruce A., Stitt, Timothy, Swan, Daniel, Talbot, Nicholas J., Saunders, Diane G. O., Win, Joe and Kamoun, Sophien (2016) Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae. BMC Biology, 14. ISSN 1741-7007

Maqbool, Abbas, Hughes, Richard K., Dagdas, Yasin F., Tregidgo, Nicholas, Zess, Erin, Belhaj, Khaoula, Round, Adam, Bozkurt, Tolga O., Kamoun, Sophien and Banfield, Mark J. (2016) Structural basis of host autophagy-related protein 8 (ATG8) binding by the Irish Potato Famine pathogen effector protein PexRD54. Journal of Biological Chemistry, 291 (38). pp. 20270-20282. ISSN 0021-9258

Kamoun, Sophien and Zipfel, Cyril (2016) Fungal pathogenesis: Host modulation every which way. Nature Microbiology, 1 (6).

Yoshida, Kentaro, Saunders, Diane G O, Mitsuoka, Chikako, Natsume, Satoshi, Kosugi, Shunichi, Saitoh, Hiromasa, Inoue, Yoshihiro, Chuma, Izumi, Tosa, Yukio, Cano, Liliana M, Kamoun, Sophien and Terauchi, Ryohei (2016) Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements. BMC Genomics, 17. ISSN 1471-2164

Giannakopoulou, Artemis, Bialas, Aleksandra, Kamoun, Sophien and Vleeshouwers, Vivianne G A A (2016) Plant immunity switched from bacteria to virus. Nature Biotechnology, 34 (4). pp. 391-392. ISSN 1087-0156

Petre, Benjamin, Lorrain, Cécile, Saunders, Diane G O, Win, Joe, Sklenar, Jan, Duplessis, Sébastien and Kamoun, Sophien (2016) Rust fungal effectors mimic host transit peptides to translocate into chloroplasts. Cellular Microbiology, 18 (4). pp. 453-465. ISSN 1462-5814

Kamoun, Sophien and Zipfel, Cyril (2016) Scientific record:Class uncorrected errors as misconduct. Nature, 531 (7593). p. 173. ISSN 0028-0836

Wu, Chih-Hang, Belhaj, Khaoula, Bozkurt, Tolga O, Birk, Marlène S and Kamoun, Sophien (2016) Helper NLR proteins NRC2a/b and NRC3 but not NRC1 are required for Pto-mediated cell death and resistance in Nicotiana benthamiana. New Phytologist, 209 (4). pp. 1344-1352. ISSN 0028-646X

Petre, Benjamin, Saunders, Diane G O, Sklenar, Jan, Lorrain, Cécile, Krasileva, Ksenia V, Win, Joe, Duplessis, Sébastien and Kamoun, Sophien (2016) Heterologous expression screens in Nicotiana benthamiana identify a candidate effector of the wheat Yellow Rust Pathogen that associates with processing bodies. PLoS One, 11 (2). ISSN 1932-6203

Dagdas, Yasin F, Belhaj, Khaoula, Maqbool, Abbas, Chaparro-Garcia, Angela, Pandey, Pooja, Petre, Benjamin, Tabassum, Nadra, Cruz-Mireles, Neftaly, Hughes, Richard K, Sklenar, Jan, Win, Joe, Menke, Frank, Findlay, Kim, Banfield, Mark J, Kamoun, Sophien and Bozkurt, Tolga O (2016) An effector of the Irish potato famine pathogen antagonizes a host autophagy cargo receptor. eLife, 5. ISSN 2050-084X

Dong, Suomeng, Raffaele, Sylvain and Kamoun, Sophien (2015) The two-speed genomes of filamentous pathogens:Waltz with plants. Current Opinion in Genetics and Development, 35. pp. 57-65. ISSN 0959-437X

Giannakopoulou, Artemis, Steele, John F C, Segretin, Maria Eugenia, Bozkurt, Tolga O., Zhou, Ji, Robatzek, Silke, Banfield, Mark J., Pais, Marina and Kamoun, Sophien (2015) Tomato I2 immune receptor can be engineered to confer partial resistance to the oomycete phytophthora infestans in addition to the fungus fusarium oxysporum. Molecular Plant-Microbe Interactions, 28 (12). pp. 1316-1329. ISSN 0894-0282

Momany, Michelle, Di Pietro, Antonio, Alexander, William G., Barker, Bridget M., Harb, Omar S., Kamoun, Sophien, Martin, Francis, Pires, J. Chris, Stajich, Jason E., Thomma, Bart P H J and Unruh, Sarah (2015) Meeting report:Fungal genomics meets social media: Highlights of the 28th fungal genetics conference at asilomar. G3-Genes Genomes Genetics, 5 (12). pp. 2523-2525. ISSN 2160-1836

Chaparro-Garcia, Angela, Kamoun, Sophien and Nekrasov, Vladimir (2015) Boosting plant immunity with CRISPR/Cas. Genome Biology, 16. ISSN 1474-760X

Sharma, Rahul, Xia, Xiaojuan, Cano, Liliana M., Evangelisti, Edouard, Kemen, Eric, Judelson, Howard, Oome, Stan, Sambles, Christine, van den Hoogen, D. Johan, Kitner, Miloslav, Klein, Joël, Meijer, Harold J G, Spring, Otmar, Win, Joe, Zipper, Reinhard, Bode, Helge B., Govers, Francine, Kamoun, Sophien, Schornack, Sebastian, Studholme, David J., Van den Ackerveken, Guido and Thines, Marco (2015) Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora. BMC Genomics, 16 (1). ISSN 1471-2164

Patron, Nicola J., Orzaez, Diego, Marillonnet, Sylvestre, Warzecha, Heribert, Matthewman, Colette, Youles, Mark, Raitskin, Oleg, Leveau, Aymeric, Farré, Gemma, Rogers, Christian, Smith, Alison, Hibberd, Julian, Webb, Alex A. R., Locke, James, Schornack, Sebastian, Ajioka, Jim, Baulcombe, David C., Zipfel, Cyril, Kamoun, Sophien, Jones, Jonathan D. G., Kuhn, Hannah, Robatzek, Silke, Van Esse, H. Peter, Sanders, Dale, Oldroyd, Giles, Martin, Cathie, Field, Rob, O'Connor, Sarah, Fox, Samantha, Wulff, Brande, Miller, Ben, Breakspear, Andy, Radhakrishnan, Guru, Delaux, Pierre-Marc, Loqué, Dominique, Granell, Antonio, Tissier, Alain, Shih, Patrick, Brutnell, Thomas P., Quick, W. Paul, Rischer, Heiko, Fraser, Paul D., Aharoni, Asaph, Raines, Christine, South, Paul F., Ané, Jean-Michel, Hamberger, Björn R., Langdale, Jane, Stougaard, Jens, Bouwmeester, Harro, Udvardi, Michael, Murray, James A. H., Ntoukakis, Vardis, Schäfer, Patrick, Denby, Katherine, Edwards, Keith J., Osbourn, Anne and Haseloff, Jim (2015) Standards for plant synthetic biology: A common syntax for exchange of DNA parts. New Phytologist, 208 (1). pp. 13-19. ISSN 0028-646X

Yoshida, Kentaro, Sasaki, Eriko and Kamoun, Sophien (2015) Computational analyses of ancient pathogen DNA from herbarium samples:Challenges and prospects. Frontiers in Plant Science, 6. ISSN 1664-462X

Rickett, Lydia M, Pullen, Nick, Hartley, Matthew, Zipfel, Cyril, Kamoun, Sophien, Baranyi, József and Morris, Richard J (2015) Incorporating prior knowledge improves detection of differences in bacterial growth rate. BMC Systems Biology, 9. ISSN 1752-0509

Chaparro-Garcia, Angela, Schwizer, Simon, Sklenar, Jan, Yoshida, Kentaro, Petre, Benjamin, Bos, Jorunn I. B., Schornack, Sebastian, Jones, Alexandra M. E., Bozkurt, Tolga O. and Kamoun, Sophien (2015) Phytophthora infestans RXLR-WY effector AVR3a associates with dynamin-related protein 2 required for endocytosis of the plant pattern recognition receptor FLS2. PLoS One, 10 (9). ISSN 1932-6203

Fujisaki, Koki, Abe, Yoshiko, Ito, Akiko, Saitoh, Hiromasa, Yoshida, Kentaro, Kanzaki, Hiroyuki, Kanzaki, Eiko, Utsushi, Hiroe, Yamashita, Tetsuro, Kamoun, Sophien and Terauchi, Ryohei (2015) Rice Exo70 interacts with a fungal effector, AVR-Pii, and is required for AVR-Pii-triggered immunity. The Plant Journal, 83 (5). pp. 875-887. ISSN 0960-7412

Ilyas, Muhammad, Hörger, Anja C., Bozkurt, Tolga O., Van Den Burg, Harrold A., Kaschani, Farnusch, Kaiser, Markus, Belhaj, Khaoula, Smoker, Matthew, Joosten, Matthieu H. A. J., Kamoun, Sophien and van der Hoorn, Renier A. L. (2015) Functional divergence of two secreted immune proteases of tomato. Current Biology, 25 (17). pp. 2300-2306. ISSN 0960-9822

Maqbool, A., Saitoh, H., Franceschetti, M., Stevenson, C. E M, Uemura, A., Kanzaki, H., Kamoun, S., Terauchi, R. and Banfield, M. J. (2015) Structural basis of pathogen recognition by an integrated HMA domain in a plant NLR immune receptor. eLife, 4. ISSN 2050-084X

Oliva, Ricardo F., Cano, Liliana M., Raffaele, Sylvain, Win, Joe, Bozkurt, Tolga O., Belhaj, Khaoula, Oh, Sang-keun, Thines, Marco and Kamoun, Sophien (2015) A recent expansion of the RXLR effector gene Avrblb2 is maintained in global populations of Phytophthora infestans indicating different contributions to virulence. Molecular Plant-Microbe Interactions, 28 (8). pp. 901-912. ISSN 0894-0282

Rallapalli, Ghanasyam, Players, Fraxinus, Saunders, Diane Go, Yoshida, Kentaro, Edwards, Anne, Lugo, Carlos A., Collin, Steve, Clavijo, Bernardo, Corpas, Manuel, Swarbreck, David, Clark, Matthew, Downie, J. Allan, Kamoun, Sophien and MacLean, Dan and Team Cooper (2015) Lessons from fraxinus, a crowd-sourced citizen science game in genomics. eLife, 4. ISSN 2050-084X

Solovyeva, Irina, Schmuker, Angelika, Cano, Liliana M., van Damme, Mireille, Ploch, Sebastian, Kamoun, Sophien and Thines, Marco (2015) Evolution of Hyaloperonospora effectors:ATR1 effector homologs from sister species of the downy mildew pathogen H. arabidopsidis are not recognised by RPP1^WsB. Mycological Progress, 14 (7). ISSN 1617-416X

Petre, Benjamin, Saunders, Diane G. O., Sklenar, Jan, Lorrain, Cécile, Win, Joe, Duplessis, Sébastien and Kamoun, Sophien (2015) Candidate effector proteins of the rust pathogen Melampsora larici-populina target diverse plant cell compartments. Molecular Plant-Microbe Interactions, 28 (6). pp. 689-700. ISSN 0894-0282

Kamoun, Sophien, Furzer, Oliver, Jones, Jonathan D. G., Judelson, Howard S., Ali, Gul Shad, Dalio, Ronaldo J. D., Roy, Sanjoy Guha, Schena, Leonardo, Zambounis, Antonios, Panabières, Franck, Cahill, David, Ruocco, Michelina, Figueiredo, Andreia, Chen, Xiao-ren, Hulvey, Jon, Stam, Remco, Lamour, Kurt, Gijzen, Mark, Tyler, Brett M., Grünwald, Niklaus J., Mukhtar, M. Shahid, Tomé, Daniel F. A., Tör, Mahmut, Van Den Ackerveken, Guido, Mcdowell, John, Daayf, Fouad, Fry, William E., Lindqvist-kreuze, Hannele, Meijer, Harold J. G., Petre, Benjamin, Ristaino, Jean, Yoshida, Kentaro, Birch, Paul R. J. and Govers, Francine (2015) The Top 10 oomycete pathogens in molecular plant pathology:Top 10 oomycete plant pathogens. Molecular Plant Pathology, 16 (4). pp. 413-434. ISSN 1464-6722

Takagi, Hiroki, Tamiru, Muluneh, Abe, Akira, Yoshida, Kentaro, Uemura, Aiko, Yaegashi, Hiroki, Obara, Tsutomu, Oikawa, Kaori, Utsushi, Hiroe, Kanzaki, Eiko, Mitsuoka, Chikako, Natsume, Satoshi, Kosugi, Shunichi, Kanzaki, Hiroyuki, Matsumura, Hideo, Urasaki, Naoya, Kamoun, Sophien and Terauchi, Ryohei (2015) MutMap accelerates breeding of a salt-tolerant rice cultivar. Nature Biotechnology, 33 (5). 445–449. ISSN 1087-0156

Belhaj, Khaoula, Chaparro-Garcia, Angela, Kamoun, Sophien, Patron, Nicola J. and Nekrasov, Vladimir (2015) Editing plant genomes with CRISPR/Cas9. Current Opinion in Biotechnology, 32. pp. 76-84. ISSN 0958-1669

Wu, Chih-hang, Krasileva, Ksenia V., Banfield, Mark J., Terauchi, Ryohei and Kamoun, Sophien (2015) The “sensor domains” of plant NLR proteins: more than decoys? Frontiers in Plant Science, 6. ISSN 1664-462X

Du, Juan, Verzaux, Estelle, Chaparro-Garcia, Angela, Bijsterbosch, Gerard, Keizer, L. C. Paul, Zhou, Ji, Liebrand, Thomas W. H., Xie, Conghua, Govers, Francine, Robatzek, Silke, Van Der Vossen, Edwin A. G., Jacobsen, Evert, Visser, Richard G. F., Kamoun, Sophien and Vleeshouwers, Vivianne G. A. A. (2015) Elicitin recognition confers enhanced resistance to Phytophthora infestans in potato. Nature Plants, 1 (4). ISSN 2055-026X

Hubbard, Amelia, Lewis, Clare M., Yoshida, Kentaro, Ramirez-Gonzalez, Ricardo H., De Vallavieille-Pope, Claude, Thomas, Jane, Kamoun, Sophien, Bayles, Rosemary, Uauy, Cristobal and Saunders, Diane (2015) Field pathogenomics reveals the emergence of a diverse wheat yellow rust population. Genome Biology, 16 (1). ISSN 1474-760X

Bozkurt, Tolga O., Belhaj, Khaoula, Dagdas, Yasin F., Chaparro-Garcia, Angela, Wu, Chih-hang, Cano, Liliana M. and Kamoun, Sophien (2015) Rerouting of plant late endocytic trafficking toward a pathogen interface. Traffic, 16 (2). pp. 204-226. ISSN 1398-9219

Giannakopoulou, Artemis, Schornack, Sebastian, Bozkurt, Tolga O., Haart, Dave, Ro, Dae Kyun, Faraldos, Juan A., Kamoun, Sophien and O'Maille, Paul E. (2014) Variation in capsidiol sensitivity between phytophthora infestans and phytophthora capsici is consistent with their host range. PLoS One, 9 (9). ISSN 1932-6203

Bozkurt, Tolga O., Richardson, Annis, Dagdas, Yasin F., Mongrand, Sébastien, Kamoun, Sophien and Raffaele, Sylvain (2014) The plant membrane-associated REMORIN1.3 accumulates in discrete perihaustorial domains and enhances susceptibility to Phytophthora infestans. Plant Physiology, 165 (3). pp. 1005-1018. ISSN 0032-0889

Alfred, Jane, Dangl, Jeffery L., Kamoun, Sophien and McCouch, Susan R. (2014) New horizons for plant translational research. PLoS Biology, 12 (6). ISSN 1545-7885

Yoshida, Kentaro, Burbano, Hernán A., Krause, Johannes, Thines, Marco, Weigel, Detlef and Kamoun, Sophien (2014) Mining herbaria for plant pathogen genomes:Back to the future. PLoS Pathogens, 10 (4). ISSN 1553-7366

Nemri, Adnane, Saunders, Diane G O, Anderson, Claire, Upadhyaya, Narayana M., Win, Joe, Lawrence, Gregory J., Jones, David A., Kamoun, Sophien, Ellis, Jeffrey G. and Dodds, Peter N. (2014) The genome sequence and effector complement of the flax rust pathogen Melampsora lini. Frontiers in Plant Science, 5 (MAR). ISSN 1664-462X

Petre, Benjamin and Kamoun, Sophien (2014) How do filamentous pathogens deliver effector proteins into plant cells? PLoS Biology, 12 (2). ISSN 1544-9173

Lin, Kui, Limpens, Erik, Zhang, Zhonghua, Ivanov, Sergey, Saunders, Diane G O, Mu, Desheng, Pang, Erli, Cao, Huifen, Cha, Hwangho, Lin, Tao, Zhou, Qian, Shang, Yi, Li, Ying, Sharma, Trupti, van Velzen, Robin, de Ruijter, Norbert, Aanen, Duur K., Win, Joe, Kamoun, Sophien, Bisseling, Ton, Geurts, René and Huang, Sanwen (2014) Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus. PLoS Genetics, 10 (1). ISSN 1553-7390

Dong, Suomeng, Stam, Remco, Cano, Liliana M., Song, Jing, Sklenar, Jan, Yoshida, Kentaro, Bozkurt, Tolga O., Oliva, Ricardo, Liu, Zhenyu, Tian, Miaoying, Win, Joe, Banfield, Mark J., Jones, Alexandra M E, Van Der Hoorn, Renier A L and Kamoun, Sophien (2014) Effector specialization in a lineage of the Irish potato famine pathogen. Science, 343 (6170). pp. 552-555. ISSN 0036-8075

King, Stuart R F, McLellan, Hazel, Boevink, Petra C., Armstrong, Miles R., Bukharov, Tatyana, Sukarta, Octavina, Win, Joe, Kamoun, Sophien, Birch, Paul R J and Banfield, Mark J. (2014) Phytophthora infestans RXLR effector PexRD2 interacts with host MAPKKKε to suppress plant immune signaling. The Plant Cell, 26 (3). pp. 1345-1359. ISSN 1040-4651

Lee, Hyun Ah, Kim, Shin Young, Oh, Sang Keun, Yeom, Seon In, Kim, Saet Byul, Kim, Myung Shin, Kamoun, Sophien and Choi, Doil (2014) Multiple recognition of RXLR effectors is associated with nonhost resistance of pepper against Phytophthora infestans. New Phytologist, 203 (3). pp. 926-938. ISSN 0028-646X

Saunders, Diane G O, Win, Joe, Kamoun, Sophien and Raffaele, Sylvain (2014) Two-dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and other eukaryotes. Methods in Molecular Biology, 1127. pp. 29-51. ISSN 1064-3745

Segretin, María Eugenia, Pais, Marina, Franceschetti, Marina, Chaparro-Garcia, Angela, Bos, Jorunn I B, Banfield, Mark J. and Kamoun, Sophien (2014) Single amino acid mutations in the potato immune receptor R3a expand response to Phytophthora effectors. Molecular Plant-Microbe Interactions, 27 (7). pp. 624-637. ISSN 0894-0282

MacLean, Dan, Yoshida, Kentaro, Edwards, Anne, Crossman, Lisa, Clavijo, Bernardo, Clark, Matt, Swarbreck, David, Bashton, Matthew, Chapman, Patrick, Gijzen, Mark, Caccamo, Mario, Downie, Allan, Kamoun, Sophien and Saunders, Diane G. O. (2013) Crowdsourcing genomic analyses of ash and ash dieback - power to the people. GigaScience, 2 (1). ISSN 2047-217X

Sharma, Shailendra, Sharma, Shiveta, Hirabuchi, Akiko, Yoshida, Kentaro, Fujisaki, Koki, Ito, Akiko, Uemura, Aiko, Terauchi, Ryohei, Kamoun, Sophien, Sohn, Kee Hoon, Jones, Jonathan D. G. and Saitoh, Hiromasa (2013) Deployment of the Burkholderia glumae type III secretion system as an efficient tool for translocating pathogen effectors to monocot cells. The Plant Journal, 74 (4). pp. 701-712. ISSN 0960-7412

Win, J, Chaparro-Garcia, A, Belhaj, K, Saunders, D G O, Yoshida, K, Dong, S, Schornack, S, Zipfel, C, Robatzek, S, Hogenhout, S A and Kamoun, S (2012) Effector biology of plant-associated organisms:concepts and perspectives. Cold Spring Harbor Symposia on Quantitative Biology, 77. pp. 235-247. ISSN 1943-4456

Boutemy, Laurence S., King, Stuart R. F., Win, Joe, Hughes, Richard K., Clarke, Thomas A., Blumenschein, Tharin M. A., Kamoun, Sophien and Banfield, Mark J. (2011) Structures of Phytophthora RXLR effector proteins: a conserved but adaptable fold underpins functional diversity. Journal of Biological Chemistry, 286 (41). pp. 35834-35842. ISSN 0021-9258

Chaparro-Garcia, Angela, Wilkinson, Rachael C., Gimenez-Ibanez, Selena, Findlay, Kim, Coffey, Michael D., Zipfel, Cyril, Rathjen, John P., Kamoun, Sophien and Schornack, Sebastian (2011) The receptor-like kinase SERK3/BAK1 is required for basal resistance against the late blight pathogen phytophthora infestans in Nicotiana benthamiana. PLoS One, 6 (1). ISSN 1932-6203

Bos, Jorunn I. B., Armstrong, Miles R., Gilroy, Eleanor M., Boevink, Petra C., Hein, Ingo, Taylor, Rosalind M., Zhendong, Tian, Engelhardt, Stefan, Vetukuri, Ramesh R., Harrower, Brian, Dixelius, Christina, Bryan, Glenn, Sadanandom, Ari, Whisson, Stephen C., Kamoun, Sophien and Birch, Paul R. J. (2010) Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1. Proceedings of the National Academy of Sciences, 107 (21). pp. 9909-9914. ISSN 0027-8424

Raffaele, Sylvain, Farrer, Rhys A., Cano, Liliana M., Studholme, David J., MacLean, David, Thines, Marco, Jiang, Rays H. Y., Zody, Michael C., Kunjeti, Sridhara G., Donofrio, Nicole M., Meyers, Blake C., Nusbaum, Chad and Kamoun, Sophien (2010) Genome evolution following host jumps in the Irish potato famine pathogen lineage. Science, 330 (6010). pp. 1540-1543. ISSN 0036-8075

Schornack, Sebastian, van Damme, Mireille, Bozkurt, Tolga O., Cano Mogrovejo, Liliana M., Smoker, Matthew, Thines, Marco, Gaulin, Elodie, Kamoun, Sophien and Huitema, Edgar (2010) Ancient class of translocated oomycete effectors targets the host nucleus. Proceedings of the National Academy of Sciences, 107 (40). pp. 17421-17426. ISSN 0027-8424

Haas, Brain J., Kamoun, Sophien, Zody, Michael C., Jiang, Rays H. Y., Handsaker, Robert E., Cano Mogrovejo, Liliana M., Grabherr, Manfred, Kodira, Chinnappa D., Raffaele, Sylvain, Torto-Alalibo, Trudy, Bozkurt, Tolga O., Ah-Fong, Audrey M. V., Alvarado, Lucia, Anderson, Vicky L., Armstrong, Miles R., Avrova, Anna, Baxter, Laura, Beynon, Jim, Boevink, Petra C., Bollmann, Stephanie R., Bos, Jorunn I. B., Bulone, Vincent, Cai, Guohong, Cakir, Cahid, Carrington, James C., Chawner, Megan, Conti, Lucio, Costanzo, Stefano, Ewan, Richard, Fahlgren, Noah, Fischbach, Michael A., Fugelstad, Johanna, Gilroy, Eleanor M., Gnerre, Sante, Green, Pamela J., Grenville-Briggs, Laura J., Griffith, John, Grünwald, Niklaus J., Horn, Karolyn, Horner, Neil R., Hu, Chia-Hui, Huitema, Edgar, Jeong, Dong-Hoon, Jones, Alexandra M. E., Jones, Jonathan D. G., Jones, Richard W., Karlsson, Elinor K., Kunjeti, Sridhara G., Lamour, Kurt, Liu, Zhenyu, Ma, LiJun, MacLean, Daniel, Chibucos, Marcus C., McDonald, Hayes, McWalters, Jessica, Meijer, Harold J. G., Morgan, William, Morris, Paul F., Munro, Carol A., O’Neill, Keith, Ospina-Giraldo, Manuel, Pinzón, Andrés, Pritchard, Leighton, Ramsahoye, Bernard, Ren, Qinghu, Restrepo, Silvia, Roy, Sourav, Sadanandom, Ari, Savidor, Alon, Schornack, Sebastian, Schwartz, David C., Schumann, Ulrike D., Schwessinger, Ben, Seyer, Lauren, Sharpe, Ted, Silvar, Cristina, Song, Jing, Studholme, David J., Sykes, Sean, Thines, Marco, van de Vondervoort, Peer J. I., Phuntumart, Vipaporn, Wawra, Stephan, Weide, Rob, Win, Joe, Young, Carolyn, Zhou, Shiguo, Fry, William, Meyers, Blake C., van West, Pieter, Ristaino, Jean, Govers, Francine, Birch, Paul R. J., Whisson, Stephen C., Judelson, Howard S. and Nusbaum, Chad (2009) Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature, 461 (7262). pp. 393-398. ISSN 0028-0836

Song, Jing, Win, Joe, Tian, Miaoying, Schornack, Sebastian, Kaschani, Farnusch, Ilyas, Muhammad, van der Hoorn, Renier A. L. and Kamoun, Sophien (2009) Apoplastic effectors secreted by two unrelated eukaryotic plant pathogens target the tomato defense protease Rcr3. Proceedings of the National Academy of Sciences, 106 (5). pp. 1654-1659. ISSN 0027-8424

Book Section

Petre, Benjamin, Win, Joe, Menke, Frank L H and Kamoun, Sophien (2017) Protein-Protein Interaction Assays with Effector-GFP Fusions in Nicotiana benthamiana. In: Wheat Rust Diseases. Methods in Molecular Biology . Humana Press, pp. 85-98. ISBN 978-1-4939-7248-7

Terauchi, Ryohei, Abe, Akira, Takagi, Hiroki, Tamiru, Muluneh, Fekih, Rym, Natsume, Satoshi, Yaegashi, Hiroki, Kosugi, Shunichi, Kanzaki, Hiroyuki, Matsumura, Hideo, Saitoh, Hiromasa, Yoshida, Kentaro, Cano, Liliana and Kamoun, Sophien (2015) Whole genome sequencing to identify genes and QTL in rice. In: Advances in the Understanding of Biological Sciences Using Next Generation Sequencing (NGS) Approaches. Springer, pp. 33-42. ISBN 9783319171579