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Moore, Lisa R., Caspi, Ron, Campbell, Douglas A., Casey, John R., Crevecoeur, Sophie, Lea-Smith, David J. 
ORCID: https://orcid.org/0000-0003-2463-406X, Long, Bin, Omar, Naaman M., Paley, Suzanne M., Schmelling, Nicolas M., Torrado, Alejandro, Zehr, Jonathan P. and Karp, Peter D.
(2024)
CyanoCyc cyanobacterial web portal.
Frontiers in Microbiology, 15.
ISSN 1664-302X
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Abstract
CyanoCyc is a web portal that integrates an exceptionally rich database collection of information about cyanobacterial genomes with an extensive suite of bioinformatics tools. It was developed to address the needs of the cyanobacterial research and biotechnology communities. The 277 annotated cyanobacterial genomes currently in CyanoCyc are supplemented with computational inferences including predicted metabolic pathways, operons, protein complexes, and orthologs; and with data imported from external databases, such as protein features and Gene Ontology (GO) terms imported from UniProt. Five of the genome databases have undergone manual curation with input from more than a dozen cyanobacteria experts to correct errors and integrate information from more than 1,765 published articles. CyanoCyc has bioinformatics tools that encompass genome, metabolic pathway and regulatory informatics; omics data analysis; and comparative analyses, including visualizations of multiple genomes aligned at orthologous genes, and comparisons of metabolic networks for multiple organisms. CyanoCyc is a high-quality, reliable knowledgebase that accelerates scientists’ work by enabling users to quickly find accurate information using its powerful set of search tools, to understand gene function through expert mini-reviews with citations, to acquire information quickly using its interactive visualization tools, and to inform better decision-making for fundamental and applied research.
| Item Type: | Article |
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| Additional Information: | Funding Information: The author(s) declare financial support was received for the research, authorship, and/or publication of this article. We recognize and appreciate the funding for the following authors: PK, LM, RC, and SP from SRI International; DC acknowledges Canada Research Chair in Phytoplankton Ecophysiology; DL-S acknowledges funding from the Natural Environmental Research Council, UK (NE/X014428), and the Biotechnology and Biological Sciences Research Council, UK (BB/S020365/1). JC acknowledges funding as part of the Lawrence Livermore National Laboratory’s μBiospheres Science Focus Area FWP SCW1039 supported by the Genome Sciences Program of the U.S. Department of Energy’s Office of Biological and Environmental Research. This work was produced under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344. LLNL-JRNL-859262. Funding Information: The author(s) declare financial support was received for the research, authorship, and/or publication of this article. We recognize and appreciate the funding for the following authors: PK, LM, RC, and SP from SRI International; DC acknowledges Canada Research Chair in Phytoplankton Ecophysiology; DL-S acknowledges funding from the Natural Environmental Research Council, UK (NE/X014428), and the Biotechnology and Biological Sciences Research Council, UK (BB/S020365/1). JC acknowledges funding as part of the Lawrence Livermore National Laboratory’s μBiospheres Science Focus Area FWP SCW1039 supported by the Genome Sciences Program of the U.S. Department of Energy’s Office of Biological and Environmental Research. This work was produced under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344. LLNL-JRNL-859262. Publisher Copyright: Copyright © 2024 Moore, Caspi, Campbell, Casey, Crevecoeur, Lea-Smith, Long, Omar, Paley, Schmelling, Torrado, Zehr and Karp. |
| Uncontrolled Keywords: | bioinformatics,biotechnology,curation,cyanobacteria,cyanocyc,database,genomes,metabolism,microbiology,microbiology (medical) ,/dk/atira/pure/subjectarea/asjc/2400/2404 |
| Faculty \ School: | Faculty of Science > School of Biological Sciences |
| Related URLs: | |
| Depositing User: | LivePure Connector |
| Date Deposited: | 26 Apr 2024 14:30 |
| Last Modified: | 26 Apr 2024 14:30 |
| URI: | https://ueaeprints.uea.ac.uk/id/eprint/95028 |
| DOI: | 10.3389/fmicb.2024.1340413 |
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