Y chromosome sequences reveal a short Beringian standstill, rapid expansion, and early population structure of Native American founders

Pinotti, Thomaz, Bergström, Anders ORCID: https://orcid.org/0000-0002-4096-9268, Geppert, Maria, Bawn, Matt, Ohasi, Dominique, Shi, Wentao, Lacerda, Daniela R., Solli, Arne, Norstedt, Jakob, Reed, Kate, Dawtry, Kim, González-Andrade, Fabricio, Paz-y-Miño, Cesar, Revollo, Susana, Cuellar, Cinthia, Jota, Marilza S., Santos, José E., Ayub, Qasim, Kivisild, Toomas, Sandoval, José R., Fujita, Ricardo, Xue, Yali, Roewer, Lutz, Santos, Fabrício R. and Tyler-Smith, Chris (2019) Y chromosome sequences reveal a short Beringian standstill, rapid expansion, and early population structure of Native American founders. Current Biology, 29 (1). 149-157.e3. ISSN 0960-9822

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Abstract

The Americas were the last inhabitable continents to be occupied by humans, with a growing multidisciplinary consensus for entry 15–25 thousand years ago (kya) from northeast Asia via the former Beringia land bridge [1, 2, 3, 4]. Autosomal DNA analyses have dated the separation of Native American ancestors from the Asian gene pool to 23 kya or later [5, 6] and mtDNA analyses to ∼25 kya [7], followed by isolation (“Beringian Standstill” [8, 9]) for 2.4–9 ky and then a rapid expansion throughout the Americas. Here, we present a calibrated sequence-based analysis of 222 Native American and relevant Eurasian Y chromosomes (24 new) from haplogroups Q and C [10], with four major conclusions. First, we identify three to four independent lineages as autochthonous and likely founders: the major Q-M3 and rarer Q-CTS1780 present throughout the Americas, the very rare C3-MPB373 in South America, and possibly the C3-P39/Z30536 in North America. Second, from the divergence times and Eurasian/American distribution of lineages, we estimate a Beringian Standstill duration of 2.7 ky or 4.6 ky, according to alternative models, and entry south of the ice sheet after 19.5 kya. Third, we describe the star-like expansion of Q-M848 (within Q-M3) starting at 15 kya [11] in the Americas, followed by establishment of substantial spatial structure in South America by 12 kya. Fourth, the deep branches of the Q-CTS1780 lineage present at low frequencies throughout the Americas today [12] may reflect a separate out-of-Beringia dispersal after the melting of the glaciers at the end of the Pleistocene.

Item Type:	Article
Faculty \ School:	Faculty of Science > School of Biological Sciences
Depositing User:	LivePure Connector
Date Deposited:	24 Oct 2023 01:45
Last Modified:	24 Oct 2023 01:45
URI:	https://ueaeprints.uea.ac.uk/id/eprint/93432
DOI:	10.1016/j.cub.2018.11.029

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