Lin, Ke, Kools, Harrie, de Groot, Philip J, Gavai, Anand K, Basnet, Ram K, Cheng, Feng, Wu, Jian, Wang, Xiaowu, Lommen, Arjen, Hooiveld, Guido J E J, Bonnema, Guusje, Visser, Richard G F, Muller, Michael R and Leunissen, Jack A M (2011) MADMAX - Management and analysis database for multiple ~omics experiments. Journal of Integrative Bioinformatics, 8 (2). p. 160. ISSN 1613-4516

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Abstract

The rapid increase of ~omics datasets generated by microarray, mass spectrometry and next generation sequencing technologies requires an integrated platform that can combine results from different ~omics datasets to provide novel insights in the understanding of biological systems. MADMAX is designed to provide a solution for storage and analysis of complex ~omics datasets. In addition, analysis results (such as lists of genes) will be merged to reveal candidate genes supported by all datasets. The system constitutes an ISA-Tab compliant LIMS part which is independent of different analysis pipelines. A pilot study of different type of ~omics data in Brassica rapa demonstrates the possible use of MADMAX. The web-based user interface provides easy access to data and analysis tools on top of the database.

Item Type:	Article
Uncontrolled Keywords:	brassica rapa,databases, genetic,genomics,internet,metabolomics,software,user-computer interface
Faculty \ School:	Faculty of Medicine and Health Sciences > Norwich Medical School
Depositing User:	Pure Connector
Date Deposited:	10 Jun 2014 20:42
Last Modified:	14 Sep 2020 07:03
URI:	https://ueaeprints.uea.ac.uk/id/eprint/47666
DOI:	10.2390/biecoll-jib-2011-160

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